RNA id: AMCG00001010


Basic Information

Item Value
RNA id AMCG00001010
length 5017
RNA type mRNA
GC content 0.45
exon number 10
gene id AMCG00001010
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 12079998 ~ 12092059 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCGACTGCCACGTAACAGCAGTGTGTGTCGCTGGCGCCGGAGTTGGCCGCAGCGCTGCAAGAGAGCCGGAGCCGAGCAGGGACACGTCCGAGCCACACAGTCCAGAAAGCGGCCGACATGGGGGCAGCGCAGAGTGTTGAGATCCCCGGCGGAGGGTCCGAGGGTTACCACGTCCTCAGAGTACAAGAGAATTCTCCTGGACACCGGGCAGGTCTTGAACCCTTCTTTGACTTCATAGTTTCCATTAATAATACACGATTGAATAAAGACAATGACACACTCAAAGACCTCTTGAAAGCAAATGTGGAGAAGCCGGTGAAGatgctggtgtacagcagcaAAACGCTGGAGCTGAGAGAGAGCTCAGTCACCCCGAGCAAcatgtggggggggcagggactACTTGGGGTCAGCATACGTTTCTGCAGCTTCGAGGGTGCCAACGAAAATGTGTGGCACGTACTGgaAGTGGAGCCAAATTCCCCTGCTGCTCTGGCAGGCTTGCGACCTCACACTGATTACATCATTGGGGCGGACACTGTCATGAATGAGTCGGAGGATCTGTTCTCACTCATTGAAACGCACGAGGGGAAAGGTCTGAAACTCTATGTATACAATACGGACACTGACAATTGTCGAGAAGTTGTCATCACGCCAAACACTGCTTGGGGTGGCGAGGGCAGcCTAGGTTGTGGGATAGGCTATGGCTATTTACACAGGATACCCACCCGCCCATTTGAAGAAGGAAAGAAGATTAGCTTACCAGGCCAGATACCCAGTACACCTGTCAGTCCATTTAAAGATGGCTTTACAGAGGTGCAGCTTTCAGCTGTTAGTCCTCCGCCGGCTGTGCCTTCTGCACCTGTTGGGTTGGAACAGGGGGTGGCTGGCCTGACCATCAGTTCTGCCCCTACTGCCCCGGCTGTACCTAATGTACTTCATACAGGTGTCCCAACTGTGCCACTGTTGCCTCCTCAAGTCAGTCCCTCAGTGGGTGGAGTTCCCCATATGAGCCCAGCCACCACGTTACCCGgCTTGATGCCATTGCCAGCAGGCCTACCCAACCTACCCAACCTGCCAAATTTGAATATCACTTTACCAAATCTCACTTCAGTTTCTTTAGCAGGAGTTGGAGGACTCCCATCGTCTACAGCAGGATTCGCGCCGCTCGCCCCACTGCCTCCCCTGAACCTGCCCGGGATAGCCCCCCTCTCAATGCCTACTGTATTCCCCACTCAGATGCCCCTTGTCACAGGCATAACGGCCCCCCCGTCTGAGTTTGCACCACCCGTAGTGTCGGTGGCACACGTAGAGCAGACTCCCGCCCTGATCCTGGACGCCACGGCCGCCTCCAAAGCACGGGCTCACGAAACCTCGACAGAGACGACGGTAACCAGTGAAACGCACTCTTCCGAGTCTACAGATGCACAGGTGTCTTCTGAATCCTCCTAACACTAAACTCTTAAATGTGGATGGATTTGtttagtatatttatttagccacaggagagaaacccaCATGATTGTGCAGTATAGGACAGAACAGCCAGCCCAGGAAGGTCCCGTTGGAGTCACGGGGGAATGAGAACAGATGAGGTTCAAGGAAGAGGTGAAATGGAGAGATTATACCCGAGTGTGTTAAAGGAAGCCTGCCAGCCAATTCCTATACAGCTTAGATTTAGGTGTATATTTCCCTcacgtttttattttcattttcatttaatctgaaCCGATCTACACCTGAGAATTTAAATTCTTTAACATGCATTCGGTGGAAGACTACTGTATGATGGTGAAGAggtgtcattttttgttttgttttttggttcttTAAATGgattgtaacatttttattacttattttttatttgtattaaatttagCATGTACATCGTGCATTTACATGTATAGTCTATTTTCCTTACTTTCTTTTGTCAATAAATAGAGGCCCTTGATTTCATGTAGGTGCTGGGTTACAGCATTCCACTTTACATTCGCTTGGAAAGATAGGCGATGAAATGAAATTGGTGTATAGCTGGAGGCCAGAAGGTGGCGCTGCAGGCCGCCTGTCTTGAAAAACGTTGTTCACATACTCAAGCAATAAACAAATGGAattttacactgtactggtCCAGCATTCATACTTTAGTTTCTCTTTCTTCATTGATGTTCAGAAATGATACCATTTGTTCGTATAGCTTTTCTGACCTATACTGTTCCTAACTCAAATCAGCATAGGGGTATTTTCCAATTAAACTTCTCCTCGATATAAAGTGCCAATCAAATCTTGAGATGAACAGTTGTAGagtgttttctgttctgaaaggcATGATGGGTATTTATACAAATCTTGATCACAGTTTTTGTTAATGGATTATTGTGGTACTGTGCATTCGTcctatcttttatttttttgctgtcaTTGCCTCCTGTTAAGAAGCCAGTGAGGGGTGTTTTTGATTGCATGTATATATTCcatgaaaatatattctgaTTATGCCGATAGTCATTTTAAAGTTCTGCATCTGTGTTGTTACATATTAATTTCAGATTGAATGTGACTTTTTGATTCGATCATTGTTTTCCACCATGAAGTTTCAGAACTGTCTTAGGGAAgcatgttaatttgttttctagtAAATACCAACATGTTAAAACAGTACGGTGTGATGATGCTGATTTTCTACTCCTGTGCATTTCCTGGGAGAAGTCTTTTCAGGAAATCTCAGTGCGATCTGCCATGGGAAGCAGCTATTCCAGCACAATCTGTATAGGGAACTGAGAACTGCACTGGAACTTGTAACGTGAAATGGCAGCCTAAATAACTCTAATTACACTGGATGTTATGTACTCCATGCTGAAATGAGTGAGCCCGGTGAATTGATGACAATGTATTGTACTGCACGGAGCTCCTcttactgtgtctgtgtgcgatCCCATAAGGAATGCACAAGTCaaagtttatttataatttgtcattcattaaaatgtacagaacacACTAGTTTTAACTTGCTGGCTCACGTCTTGTTCGGCTGCAGTGTACAAGTGTTCTGTGCAGTTGTTCAGGTGCCAGTGATGCGTAGCCTCGTCTCTGTACCGGTTTATGCCTTCAAAGCCAGTATCTTATATTCTGACCTTATGTATTTTGACAACTAATGGGTATGGGAATGCTGAAGTGCTGCAAAACAGGCTCATTAAAATTATGCTTGACTACACAGATTGCCAGTGGGGAAGGGAATGCACCTTATTAACTGTAATGATAATGGAATAATGTGCTGAGCATCCCACCACTGTATTCGCATATATATCGGGCTTTAGAGGTTTTTAGCATCCTGAATGATTTGGACAGTCTAGCCCAAGGGAGTTTCATCTCTCTTCTAAGTGTGGAGGTGTGTGTATTGCCACAGTACTGAACTCAAATTTCTCTGAGTATCAATCATAGCTGATTAAAGGACGAATATAGATCTATGTTGgcctttgttttggttttgatctGATTTAAGCATTACATGTTATTTGTCTTAATCCTCTTTtctatgattttgttttttagaaacCAATGTAGATTGACAGAAGAGCTCGCCTACTGCCTGACTTGTTTGCTGAAgtcagttattttgaattgacAGAACCCTACACAACTCTTGTCCGTGTACCTTCTCCTTAGTCTTAAGATTGGCTCTGATCTGAAGCTGCACAAGGAAGCCCCTGATTGACCAGACGTTTTTACATATCCTGTAACAGAgcgagagaaaaacagaaacattgtcTTCTATGTTCCAGAACTACAAGCCACGATGCCGTGACGTTCCGAGGTCATTCCCTGCAGCTCGGCCTGGTCGTTTTAAGCTGTCGCCTCTTTTTTTTGTGCATCTTCCCCttttctcctgctctctctgtttCTACAAAGGTCTACATATTTCTGAACAACAGATCcagatatttcatttaattgttttcagatgACCAGCTTGTTAGGTAATGTTCTCATCTCTTGTCAGCTCAGTCATGTACATCGCTTCTTTAGGAACCCACCGGTAGTTTTGATCTAGATGTCAATTTACAGCGGTAAATTAGGATTGCgttaacaaaacaaagcagaagcACTTTTGTGGTGCAAAGCTAAGTAATGTTTAATACGTTTTCTAAAGGAAGGAGTTTAGCTTAACTCCATAAAAAGAAATGTCCCTTTAAGTcagtatttttatgtaaaataaacctCAAGCTTAGGAGACTGTGTGTCAGTGATGTGCCTAATGTTGCTAAACGCCGGCCCCCGTTGTCAAGTGGCAGAGCCGGGCTGTCGGCGGATTCCCCCGGCGCTCCGCTGAGTGTGTGTTTCTAATCACTGTGGCAACTGTGTGCTGACACTGCCTCCTACTGTGTCCTTCCACTGAACATTAACTTCCCTCACacatcaatttaattaaaagcgAAAAACAAATTAGCATCGCGATCTCCGAATGAGCAGATACGTCTTCTCCACTTTGAGGCCGGGTTTCCTTAATAGCTGAATTTGTAGATTAttaggtttgtgtgtgtcacGCAGGGTTCGGCTCTGCATGTTTATGAGCCGTACGAGCAAGTGACGGTGTCTTCCCTGCGGGGAGGTTGCGCTGCACAGAGTGTGTTGGTGCTGTCGGAGGCAGGAGAATGGCATGCAGGAGGGGGCGGGATGCGTCAGATTGTGGCTACTGGGGATGCTGTGCTGCTCTTTGAACTGGTCTGGTTTGATGAGGGGGTGATGGTTTCTTCATGTacttctgtaaaaataaatttattttttttctttgcaatttgGCTTGTTTTTGCCATCAAAATCTTTTTCAGGTGTTCCTTCCTTGTAACAATGTCAAGTTCCCCATAACAGTTACTGACTGTTCAGTTCCCTACAGCTTTTCTGACCCCATTATATATTCCGTGGTACCCAGTGAAGGCGTTTTGAAAGGGTATGATTGAACGCAGCAGCTAATCACCATCttcattaacaatacatttaatttgtagttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160196 lncRNA upstream 337248 11671768 ~ 11742750 (+) True G127774
TU159869 lncRNA upstream 1635061 10442993 ~ 10444937 (+) True G127509
TU159589 lncRNA upstream 2702409 9363107 ~ 9377589 (+) True G127278
TU159484 lncRNA upstream 2997117 9081327 ~ 9082881 (+) True G127206
TU159408 lncRNA upstream 3440175 8638596 ~ 8639823 (+) True G127144
TU160371 lncRNA downstream 2082 12094141 ~ 12096863 (+) True G127924
TU160510 lncRNA downstream 268856 12360915 ~ 12362152 (+) False AMCG00001022
TU160511 lncRNA downstream 268856 12360915 ~ 12362152 (+) False AMCG00001022
TU160571 lncRNA downstream 448022 12540081 ~ 12540318 (+) True G128074
TU160600 lncRNA downstream 513980 12606039 ~ 12655172 (+) True G128101
AMCG00001013 mRNA upstream 1101 12072503 ~ 12078897 (+) True AMCG00001013
AMCG00001003 mRNA upstream 17887 12040325 ~ 12062111 (+) True AMCG00001003
AMCG00001008 mRNA upstream 45382 12019805 ~ 12034616 (+) True AMCG00001008
AMCG00001009 mRNA upstream 62776 12014714 ~ 12017222 (+) True AMCG00001009
AMCG00001002 mRNA upstream 77826 12001008 ~ 12002172 (+) False AMCG00001002
AMCG00001012 mRNA downstream 49671 12141730 ~ 12149295 (+) True AMCG00001012
AMCG00001011 mRNA downstream 57803 12149862 ~ 12157026 (+) True AMCG00001011
AMCG00001018 mRNA downstream 79330 12171389 ~ 12191575 (+) True AMCG00001018
AMCG00001016 mRNA downstream 128348 12220407 ~ 12236714 (+) True AMCG00001016
AMCG00001019 mRNA downstream 147660 12239719 ~ 12270756 (+) True AMCG00001019
TU160309 other upstream 68573 11999664 ~ 12011425 (+) True AMCG00001002
TU159756 other upstream 1925811 10147857 ~ 10154187 (+) False AMCG00000949
TU159397 other upstream 3459803 8617199 ~ 8620195 (+) True G127134
TU157662 other upstream 10383751 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 10479359 1599696 ~ 1600639 (+) False AMCG00000723
TU161370 other downstream 3077852 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 3317053 15409112 ~ 15420880 (+) False G128823
TU162207 other downstream 5931001 18023060 ~ 18044251 (+) True G129365
TU162326 other downstream 6453834 18545893 ~ 18547915 (+) True G129453
TU162312 other downstream 6463092 18555151 ~ 18558174 (+) False G129442

Expression Profile