RNA id: AMCG00001013



Basic Information


Item Value
RNA id AMCG00001013
length 1023
RNA type mRNA
GC content 0.51
exon number 8
gene id AMCG00001013
representative True

Chromosome Information


Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 12072503 ~ 12078897 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTTCCTGGAAGATTGTCTGATCCGGTACCTTGATGACACGGCTGGGGACTCTGGACAGAGAGTACCCGTTATGAGCCCAGACTGCGACTCTTTGCTCTCCGAAGAGGAGCCTGCCGTGGGGCATGGTGGGGAGAAGGAGCTCCTGCAGTTTGCTCATTTCTGTTGTAAACTTCAAAAGGGATGTAGCAACAACAAGAGCATCCACAAAGGGGTATTGCTCAACAATAGCCTGCGGACAGAGTCTGGCTACTATCGGGAGAACATCGAATGGACCAAGGGATGCCAGTTGGGGGCTGGGAAGTTTGGATCTGTCTTTGAAGTTCATGACAATATGAAGAGATTACAAGGcaggacacagacacatatgGCCCCTGAAGTGGCCAGACAATCGGAGCACGACAGCAGGGCGGACGTGTGGAGCTGCACCTGTACCCTCCTCCACATGCTGAACGCCAGGCCTCCCTGGATCAAGAAATACCGTGAGCTGCCCTCATTGGATGTGGTGATTGCCAACAATAGCCCCCCACTGTTTGAAATCCCTGAGAGGTGCCACAAGGAGGTGAGGAGACTCATTGAGATGGGCCTCACAGTGGATCAGCACAAACGCCCCCAAGCAGGAGCTCTGCGGGATGAAGTCCATGCAGTCCTAACCAACATGTATCCGTCTCGCTCCTGCTTtgacaataacataaaaaaactaaaagacaacTCACCGTTGAGCTCTCCAGACCCATCTTCAATGTCAATAAATGAGCAGTCACCCAGTCTCAGCTCTACATTGCTTACCTTAATGGACAAGCCCACAGAGCCTGTTTTTGACTCAACATGGGACCTTGAAGCACATGGATCTAGTGGCAATGCAGTAAGAAAAGAAAGTGACAATGAGATCATCATAGCCTTCCACCGTGCACGCCTGTCAACATGCAACTCCACCGAGGACTTCGAAGACTGGCTGGAGATGGTGCAAAATGCTGACAACTGGCTGGATGATGAAGTAATGGATAAAGCCAACCCCACCTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU160196 lncRNA upstream 329753 11671768 ~ 11742750 (+) True G127774
TU159869 lncRNA upstream 1627566 10442993 ~ 10444937 (+) True G127509
TU159589 lncRNA upstream 2694914 9363107 ~ 9377589 (+) True G127278
TU159484 lncRNA upstream 2989622 9081327 ~ 9082881 (+) True G127206
TU159408 lncRNA upstream 3432680 8638596 ~ 8639823 (+) True G127144
TU160371 lncRNA downstream 15244 12094141 ~ 12096863 (+) True G127924
TU160510 lncRNA downstream 282018 12360915 ~ 12362152 (+) False AMCG00001022
TU160511 lncRNA downstream 282018 12360915 ~ 12362152 (+) False AMCG00001022
TU160571 lncRNA downstream 461184 12540081 ~ 12540318 (+) True G128074
TU160600 lncRNA downstream 527142 12606039 ~ 12655172 (+) True G128101
AMCG00001003 mRNA upstream 10392 12040325 ~ 12062111 (+) True AMCG00001003
AMCG00001008 mRNA upstream 37887 12019805 ~ 12034616 (+) True AMCG00001008
AMCG00001009 mRNA upstream 55281 12014714 ~ 12017222 (+) True AMCG00001009
AMCG00001002 mRNA upstream 70331 12001008 ~ 12002172 (+) False AMCG00001002
AMCG00001007 mRNA upstream 109806 11951375 ~ 11962697 (+) True AMCG00001007
AMCG00001010 mRNA downstream 1101 12079998 ~ 12092059 (+) True AMCG00001010
AMCG00001012 mRNA downstream 62833 12141730 ~ 12149295 (+) True AMCG00001012
AMCG00001011 mRNA downstream 70965 12149862 ~ 12157026 (+) True AMCG00001011
AMCG00001018 mRNA downstream 92492 12171389 ~ 12191575 (+) True AMCG00001018
AMCG00001016 mRNA downstream 141510 12220407 ~ 12236714 (+) True AMCG00001016
TU160309 other upstream 61078 11999664 ~ 12011425 (+) True AMCG00001002
TU159756 other upstream 1918316 10147857 ~ 10154187 (+) False AMCG00000949
TU159397 other upstream 3452308 8617199 ~ 8620195 (+) True G127134
TU157662 other upstream 10376256 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 10471864 1599696 ~ 1600639 (+) False AMCG00000723
TU161370 other downstream 3091014 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 3330215 15409112 ~ 15420880 (+) False G128823
TU162207 other downstream 5944163 18023060 ~ 18044251 (+) True G129365
TU162326 other downstream 6466996 18545893 ~ 18547915 (+) True G129453
TU162312 other downstream 6476254 18555151 ~ 18558174 (+) False G129442

Expression Profile