RNA id: TU162623



Basic Information


Item Value
RNA id TU162623
length 1246
RNA type TUCP
GC content 0.40
exon number 3
gene id AMCG00001223
representative True

Chromosome Information


Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 19478260 ~ 19492344 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TTTCCCAGCTCATTGGTCAGTGGGATCTGGAGAAGGGCTGCAGTTATTAAGGGCACTCTCCACGCCCAGCTTATAAAAAGACTTTGGCTTCTCAGGGAAGCTGTACTTTCTGAAAAACTTTCAACTTGGCTTTGCTGAGctgTAGGCCTTGCTTTAAAAATGAGCGATTTAGAAAATTCCTTGGCGACCGTTATTGAGGTATTTCATAAATATTCTGAAAAGGAGGGAGACAAACATAAACTGAAGAAAAGTGAACTGAAAGATCTGATCAACAATGAGCTATCAATGTTTTTGGGGCAAATCAAAGACCAGGCCACAATGGACAGTTTAATGGAGAGCCTGGACACGGACGGGGACTCCGAATGCGACTTCCAGGAATTCATGACCTTCATCACCATGGTGACCATTTGCTGCCATGAGTTCTTTGAACACCACGAAGACGAGTAGGCACTCGTACGCCACAAATCTCTCTAGTGTAACAAAAGCGATGCAGGACATTTAACAATCTTACTTAATGTTTTCAGTTGGTTGGGAGGGTGGTCTAATAAGATTTAGCATCTCCGGAGCTATGTTGTCTTGGGTGGTGCAGTGGAAGTGTGGCTGTCTTTGTTTTAGGTTCACCGAAGTGCCTAAACATGCTCTTTCAGTCCTAAATTGAAGCATAATCCTGTAATAAATTAGCAGAAAATCTGAACATGTATTTGGGAAaattaaacatatgtatatattttgttcttttaccACTTAATTTCCCCTATGTCCTGGTCAGTGCTGCATAAAACCCTTCTGTGTTATTTGGCATTGGAAATGGCACTCAAAACTCCACTTAAACATAGAACACAACTTTACTCCTACGTccagtttaaaatattaatttccccagtgcagtgcagtgcagtataacTGATCTTGTGTACAAGCCGACCAACCACAGAGCCAAACAATGGAAGTATTGCAAGAAGGCAGATTTTGAATTGAATGCATAGAATAGTTACAAATTTACTGACAGTACCACAGAGAAAAAGGCAAGGTACATAActtaataacctttttttgtaaaaagaaaaaagaaatcaatctAGGAGTTGGCTAAAACGCAATTTCCTGCGACGTTACAATGTATTAAGGCATTGGAACTCTTGCAAGGTATATTCTGATGCTTTGAAGGATTGCTGCTATGTATTATGATTGTTAATAAACATGGTCTGTACAAATATTCTCTGTGTCCGTTGTCATACCACATGTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU162613 lncRNA upstream 108225 19373023 ~ 19377913 (+) True G129674
TU162505 lncRNA upstream 343993 19139859 ~ 19142145 (+) False G129594
TU162526 lncRNA upstream 377401 19105712 ~ 19108737 (+) True G129609
TU162512 lncRNA upstream 395900 19088148 ~ 19090238 (+) True G129597
TU162442 lncRNA upstream 684098 18796850 ~ 18802040 (+) True G129552
TU162629 lncRNA downstream 148002 19637602 ~ 19653509 (+) True G129689
TU162635 lncRNA downstream 291650 19781250 ~ 19781607 (+) True G129695
TU162636 lncRNA downstream 292047 19781647 ~ 19781862 (+) True G129696
TU162651 lncRNA downstream 505427 19995027 ~ 20095067 (+) True G129708
TU162663 lncRNA downstream 816043 20305643 ~ 20305857 (+) True G129719
AMCG00001219 mRNA upstream 242627 19231063 ~ 19243511 (+) True AMCG00001219
AMCG00001220 mRNA upstream 294041 19190051 ~ 19192097 (+) True AMCG00001220
AMCG00001221 mRNA upstream 299722 19161641 ~ 19186416 (+) True AMCG00001221
AMCG00001209 mRNA upstream 347521 19133035 ~ 19138617 (+) True AMCG00001209
AMCG00001210 mRNA upstream 355861 19124062 ~ 19130277 (+) True AMCG00001210
AMCG00001228 mRNA downstream 616455 20106055 ~ 20111585 (+) True AMCG00001228
AMCG00001226 mRNA downstream 641887 20131487 ~ 20151385 (+) True AMCG00001226
AMCG00001227 mRNA downstream 675405 20165005 ~ 20190996 (+) True AMCG00001227
AMCG00001229 mRNA downstream 1003052 20492652 ~ 20496368 (+) False AMCG00001229
AMCG00001230 mRNA downstream 1113475 20603075 ~ 20608903 (+) True AMCG00001230
TU162506 other upstream 343993 19043304 ~ 19142145 (+) True G129594
TU162456 other upstream 596414 18888391 ~ 18889724 (+) False AMCG00001203
TU162312 other upstream 927964 18555151 ~ 18558174 (+) False G129442
TU162326 other upstream 938223 18545893 ~ 18547915 (+) True G129453
TU162207 other upstream 1441887 18023060 ~ 18044251 (+) True G129365
TU162705 other downstream 1121672 20611272 ~ 20676857 (+) True AMCG00001236
TU162792 other downstream 1428958 20918558 ~ 20925240 (+) True AMCG00001241
TU162800 other downstream 1452472 20942072 ~ 20942397 (+) True G129843
TU162840 other downstream 1587535 21077135 ~ 21078870 (+) True G129877
TU162879 other downstream 1781784 21271384 ~ 21276879 (+) True G129913

Expression Profile