RNA id: AMCG00001235


Basic Information

Item Value
RNA id AMCG00001235
length 2595
RNA type mRNA
GC content 0.55
exon number 8
gene id AMCG00001235
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 20749802 ~ 20778646 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCCTGAAGAACCGCAGTTGCAAGGGGGTAACGGCCAATACAAGCAACCATGACAACAACAAAGATGCGGGACTGGTGGACAGTTGGCTGCCTGAGGGTGAACTTCTACTGCAGGCCCTCAATGGTTTTGTACTGGTCATCAGCTCAGAAGGACTCATCTTTTACGCTTCTCACACCATTCAAGACTACCTCGGATTTCATCAGACAGATGTGATGCACCAGAGTGTCTTCGAGTTGATCCACACCGAGGACCAGCAGGAGTTTCGGAAGAACTTGCACTGGGCCCTCAACCCTCCGTCTGTTGCCGAAGAAGAGGCCTCTCCACCATGCGAGAACGGAGAAGCGAATCCGTCGTTGATCACCTATAACCCAGACCAGCTGCCCCCAGAAAACTCTTCGTTCCTGGAGCGGAGTTTCGTGTGCCGGTTCCGTTGCCTATTAGACAACTCTTCAGGTTTTCTGGTGCTTAACCTGCTGGGGCGATTGAAGTTCCTCCACGGGCAGAACCGAAGGGCAGAGGATGGCTGCCCAGTCCCACCCCAGTTGGCTCTATTTGCCATCGCCACGCCTCTTCAGCCACCATCCATCCTTGAGATTAGGACCAAAAACATGATcttcagaacaaaacacaagctGGACTTCACACCAATGGCCTGCGATGCTAAGGGTAAAATCGTCCTGGGCTACACTGAAGCAGAGCTGCGCGCTCGGGGCACGGGTTACCAGTTCATCCATGCAGCCGACATGCTGTACTGTGCGGAGAATCACGTCCGGATGATCAAGACCGGAGAGAGCGGTCTGACCGTCTTCCGCCTTCTGACCAAGGAGAACCGCTGGAAATGGGTCCAGGCCAATGCTAGGCTGGTGTATAAGAACGGCAAGCCGGATTATATCATTGCCACACAGAGGCCTCTTGTggaggaggaaggaggggaGCACCTCAGGAAGCGTTCCATGCACCTCCCGTTCACCTTTGCCACCGGAGAAGCCCTGCTGTATCAGACCAGCTACCCCTTAACAGGCTTTCCAGATGCCTTCCAAGGAAAAGGGAAGGGTGGCAAATCCAAAAATAATTCTCGGAACAAGGCAGACAAAAATGAGAAGGAGAGCAACGTGGATCCCAACTCCCTGCTTGGGGCCATGATGAGGCAGAACGAGTCTGTGTATGTCTCCCACCCCGCCCTGGAGCCCAAGTTCTCCTTTAACAGCAGCCTATTCAGCGAGCCGGGAGGCTCCTCCAGCTGTGCCCCCCCATCAGGAGAGAGCTGGAGCCTGGTTCCCAACAGCGTCACGGAACTCAAGCCAGAGCTGCCCAGTTTTGACCCCCTTTTGTCAACATTGGACTCCTTGTGCCTGGACAGCGATGAAAACTGCTCCAACAATGAGCTGTTCAGCGCGCTGGAGAACCTGGGGCTGAACGCCGAGGACTTGGAGCTCCTCCTGCTGGATGAGAGGATGATCAGGGTGGAGATGGACCAAGACTACATCCCCTCTCTCAATGACCTTCTGACCAACAATGAGATTCTGTCCTTCATCCACGACTCTCTAGAGAGCAGAACTGAAGAGGGTGGCGGCAGTATCGCACTGCCCTGCCCTCAGCCTGACCCCCCACAGGCCATGTCCAAACAGCCATGTATGCCCCACGCACAGGAAGTGCCACCTCAGTACCTCGACTACAGGCCACAGCAGAAACAGCCCATCCTTCAGCTGTCTCAGCAAATGCAAGAGCACCTCAAGATGCAGGTGAAGGAGCAACCCTGGGGTCAACATCTGCAGAACTCTTCGGAGACGCAGTTGCAGATACTGGGCCAGCCGAGCCCCGCCCACGAGCAGCCTCAGACCTCAGACAGTGTGCAGCACTGGGACCGCACCCTCCAAAACGGACACTGGATCACACAGCACATGCAAATGAGTGTTGGAATACAGGGCCAAAGTGTGTCCCAGGTGGGCTTGGACCACCTCTCGCACCAGCAGTCCGTGTACAATGGGACTGCAGACCCCAGCGTTCAGGCACAACTGCACCAGCAGCGCAAGCAGCAGCAGAATCAGCTCTTGCTCCAGCTGCAGTCTCAGTGTCACTTCAAGCAAAAAGCCAACGGCAGTGCTCCTGTGAATGGGACGTACAGTTCAGTAAACCAGCAGTCGATGTTGGACCACCAGTGGCAGGGTTATAGCTACACCCCAGTAGCCCACCACAGCCATGTGGAGCTGCCAGCAAATGTGCCTGGCTTTAACGACGGGCAGGAGGTCAGCTTTCCACAGGTTCAGGCTTCAGGAGTTTCCCACATGGATTACAACATGAGTGGGATACCTGGGATGGATTTTACAATGAATGGTGGCATCTCTGAAGATGGCACCCAATATCAGGGGGTGGTGGCCACTGCTTCTTCCTACCAGGTGATATctcagaagcagcagcagcagcagcagcgagcACCCCAAGTGTCAACAACGTGCTTCTCTCAATATCAACCTCAGGACACCTCTCTGGAGCAGATTTTAGGGATGGGACAGACCCAGCAGCTGCCTTCTCTGGAATCCTACGGAATGTTTACGACCGCAGTTCCACAGGACGGAACACCGAGCAAGGTATGA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0004874 obsolete aryl hydrocarbon receptor activity molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162700 lncRNA upstream 153050 20596431 ~ 20596752 (+) True G129756
TU162668 lncRNA upstream 253457 20464363 ~ 20496345 (+) True AMCG00001229
TU162663 lncRNA upstream 443945 20305643 ~ 20305857 (+) True G129719
TU162651 lncRNA upstream 654735 19995027 ~ 20095067 (+) True G129708
TU162636 lncRNA upstream 967940 19781647 ~ 19781862 (+) True G129696
TU162870 lncRNA downstream 462691 21241337 ~ 21241568 (+) True G129904
TU162936 lncRNA downstream 630288 21408934 ~ 21409691 (+) True G129961
TU162949 lncRNA downstream 677373 21456019 ~ 21456860 (+) True G129972
TU162961 lncRNA downstream 762817 21541463 ~ 21541672 (+) True G129984
TU162964 lncRNA downstream 772784 21551430 ~ 21554095 (+) True G129985
AMCG00001237 mRNA upstream 35320 20708287 ~ 20714482 (+) True AMCG00001237
AMCG00001234 mRNA upstream 50202 20687490 ~ 20699600 (+) True AMCG00001234
AMCG00001236 mRNA upstream 121762 20624934 ~ 20628040 (+) False AMCG00001236
AMCG00001230 mRNA upstream 140899 20603075 ~ 20608903 (+) True AMCG00001230
AMCG00001229 mRNA upstream 253434 20492652 ~ 20496368 (+) False AMCG00001229
AMCG00001240 mRNA downstream 64472 20843118 ~ 20844227 (+) True AMCG00001240
AMCG00001238 mRNA downstream 69124 20847770 ~ 20856344 (+) True AMCG00001238
AMCG00001239 mRNA downstream 79966 20858612 ~ 20871643 (+) True AMCG00001239
AMCG00001241 mRNA downstream 127725 20906371 ~ 20922714 (+) False AMCG00001241
AMCG00001243 mRNA downstream 190070 20968716 ~ 20995462 (+) True AMCG00001243
TU162705 other upstream 72945 20611272 ~ 20676857 (+) True AMCG00001236
TU162623 other upstream 1260202 19486138 ~ 19489600 (+) True AMCG00001223
TU162506 other upstream 1607657 19043304 ~ 19142145 (+) True G129594
TU162456 other upstream 1860078 18888391 ~ 18889724 (+) False AMCG00001203
TU162312 other upstream 2191628 18555151 ~ 18558174 (+) False G129442
TU162792 other downstream 139912 20918558 ~ 20925240 (+) True AMCG00001241
TU162800 other downstream 163426 20942072 ~ 20942397 (+) True G129843
TU162840 other downstream 298489 21077135 ~ 21078870 (+) True G129877
TU162879 other downstream 492738 21271384 ~ 21276879 (+) True G129913
TU163362 other downstream 2387617 23166263 ~ 23166656 (+) True G130335

Expression Profile