RNA id: AMCG00001237


Basic Information

Item Value
RNA id AMCG00001237
length 309
RNA type mRNA
GC content 0.53
exon number 3
gene id AMCG00001237
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 20708287 ~ 20714482 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTATGCTGGACGTAAAAGGAGAAAACCCGTGCAAAGAACgGTAAAAACTGCCCCAGCGGAAGGGGTAAAATCAAACCCATCGAAACGTCACAGAGACCGACTAAACTCGGAGCTCGACCGCCTCGCCAGCCTTCTACCGTTTCCCGAGGAGGTGACGTCCAGCTTGGATAAACTCTCCATCCTGCGGCTAAGTGTCAGCTACCTGAGGGCCAAAAATTTCTTCACCACTGGCTTGTCTAAACCACTGAAACGTCCGCTCCTCTCCCCTCGGGATGTGAAAGCTGCCCCAGTCCTCGGCTTCTTCTGA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0004874 obsolete aryl hydrocarbon receptor activity molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162700 lncRNA upstream 111535 20596431 ~ 20596752 (+) True G129756
TU162668 lncRNA upstream 211942 20464363 ~ 20496345 (+) True AMCG00001229
TU162663 lncRNA upstream 402430 20305643 ~ 20305857 (+) True G129719
TU162651 lncRNA upstream 613220 19995027 ~ 20095067 (+) True G129708
TU162636 lncRNA upstream 926425 19781647 ~ 19781862 (+) True G129696
TU162870 lncRNA downstream 526855 21241337 ~ 21241568 (+) True G129904
TU162936 lncRNA downstream 694452 21408934 ~ 21409691 (+) True G129961
TU162949 lncRNA downstream 741537 21456019 ~ 21456860 (+) True G129972
TU162961 lncRNA downstream 826981 21541463 ~ 21541672 (+) True G129984
TU162964 lncRNA downstream 836948 21551430 ~ 21554095 (+) True G129985
AMCG00001234 mRNA upstream 8687 20687490 ~ 20699600 (+) True AMCG00001234
AMCG00001236 mRNA upstream 80247 20624934 ~ 20628040 (+) False AMCG00001236
AMCG00001230 mRNA upstream 99384 20603075 ~ 20608903 (+) True AMCG00001230
AMCG00001229 mRNA upstream 211919 20492652 ~ 20496368 (+) False AMCG00001229
AMCG00001227 mRNA upstream 517291 20165005 ~ 20190996 (+) True AMCG00001227
AMCG00001235 mRNA downstream 35320 20749802 ~ 20778646 (+) True AMCG00001235
AMCG00001240 mRNA downstream 128636 20843118 ~ 20844227 (+) True AMCG00001240
AMCG00001238 mRNA downstream 133288 20847770 ~ 20856344 (+) True AMCG00001238
AMCG00001239 mRNA downstream 144130 20858612 ~ 20871643 (+) True AMCG00001239
AMCG00001241 mRNA downstream 191889 20906371 ~ 20922714 (+) False AMCG00001241
TU162705 other upstream 31430 20611272 ~ 20676857 (+) True AMCG00001236
TU162623 other upstream 1218687 19486138 ~ 19489600 (+) True AMCG00001223
TU162506 other upstream 1566142 19043304 ~ 19142145 (+) True G129594
TU162456 other upstream 1818563 18888391 ~ 18889724 (+) False AMCG00001203
TU162312 other upstream 2150113 18555151 ~ 18558174 (+) False G129442
TU162792 other downstream 204076 20918558 ~ 20925240 (+) True AMCG00001241
TU162800 other downstream 227590 20942072 ~ 20942397 (+) True G129843
TU162840 other downstream 362653 21077135 ~ 21078870 (+) True G129877
TU162879 other downstream 556902 21271384 ~ 21276879 (+) True G129913
TU163362 other downstream 2451781 23166263 ~ 23166656 (+) True G130335

Expression Profile