RNA id: AMCG00001239


Basic Information

Item Value
RNA id AMCG00001239
length 2421
RNA type mRNA
GC content 0.57
exon number 6
gene id AMCG00001239
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 20858612 ~ 20871643 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGAGCGACGATAGAGTGGCCATTTTGACGGAGGACGAGGAAGAGCAGAAGAGGAAGTATGTGCTGGCCGAGCCCTTCAACACCCTGTCTTTGGATCAAGTGGCCGGGCCCCCTCCCGTGCCGCCACCCCCTCTGGAAACCCCTCTGCCTGCAGAGGAGGACGACATCGACTGCCTGGAAAGGAACTGCATAAAGATTGACGACCATCTCCTCATTTCCAAagtcttttatttcttcttctacGCCGCCTACGGATCCTTGCACCCTCTGCTGCCTGTCTATTACAAACAGCTGGGCATGACACCCAGTCAGAGTGGTCTTCTCGTCGGCATCCGCTACTTCATCGAGTTCTGCAGTGCTCCGTTTTGGGGGGTGGTGGCCGACCGCTTCAAGAAAGGCAAAATCGTCCTCCTGTTCTCCGTGCTCTGTTGGGTTCTGTTCAACTGCGGGATCGGTTTTGTGAGGCCGGCCTCCATGACGTGCGTCCTGAAGCACCCGACCGTAACGCCGACCAACACCACGATTACCCCGACCTCCCACTCCACCTTGAACGACACCAAGACTCGGTACAGGAGAGCTTTGTACAGTGGGATCTTCACTCTGCCCTTTTTTGACTTGGAACACCTTTTACACTCCCGGCATGCCAGAAACGCTGACGTAAACAGGACAGTGGAGCTGTTAGCTGGAGAGAATGGTACCACACCGGCATCACCCACAACCATCCCCACACCCAGTACCACCACCAGCATGACCACTCAAAGCACAACCAAGTCCTTGGACAAGTACACAATCACTTACAACAGTGACCAAGTGGAgaccatcttcctcttgatcttGTTGGTGATCATAATCGGGGAGTTCTTTAGTGCCCCCGCCGTGACCATTGTGGACACTGTGACCCTGCAGTACCTCGGCAAACACCGGGACCGCTACGGCCTGCAGAGGATGTGGGGCTCTCTGGGCTGGGGGTTGGCTATGCTCTCGGTGGGCATCGGCATCGACCACACGCACATCAGGCTCTTCATCGAGGGCACCGGCTGCGTCCTCCCCGATTACAAGAACTACCAGATTGCCTTCATTGTGTTTGGGGTCCTGATGACGCTGGCGCTGATTGTGGCCACGCAGTTCTCTTTCAGCAGCAGCATTTACAAACCTGAGGAAGACCAGAAGGAGGAAATAGAAATCCCCCAGGTGGCCCGCAACACTCCCACCGAAGGAAGTCTCGAAGCCGCCCCTCCGGCTACCCCCAGCACCAGCCAGGACCAGTTTCAATACAAAGAGCTGATCGTGCTGCTCTGCAGTGTGCGCTACGGCACGGTCCTCTTCGTGGCTTGGTTCATGGGCTTCGGCTATGGCTTCGTTTTCACCTTCCTGTACTGGCACTTAGAGGACCTGAAGGGGACCACCACGCTGTTCGGCATCTGCTCCGTGCTGAGCCACGTCTCCGAGCTGGCGGCCTACTTCACCAGCCACAAGCTCATTGAGTTGGTGGGACACATCAGGGTTTTGTATATTGGTTTGGCCTGCAACACAGCCCGCTATCTCTACATATCCTACTTAGAAAATGCTTGGATTGTCCTGCCTATGGAGGTACTTCAAGGTATCACTCACGCCTCTGTGTGGGCAGCCTGCATCTCGTATCTGAGCGCTGCCGTGCCCCCAGCACTGAGGACCTCTGCCCAGGGCATCCTGCAGGGCCTTCACCTAGGCCTGGGCAGGGGCTGCGGAGCCATGGTCGGGGGAGTCTTCGTCAATTTCTTCGgGGCGGCTGAGACCTTCAGAGGAATAGGAATGGCTTCTCTTGTGATCTTATTAGTGTTCGCTTTCATTCAGTGGGTGGTAgggaaaaatgaagaaaaagAGGACAGGATGCTGGCGGAAAACATCCCCGTACCATCCAGTCCAGTTCCCATCGCCACCATCGACCTGGTGGAGCACCAGTCTGAAGCCGTGATGCCTCGCATGGAGCCCAAGCTGCCGCCCAAGAAGACCAAACACCAGGAGGAACAAGAGGACGTCAACAAGCCGGCCTGGGTCATCTCCTCCTCGCCCTGGGTGACCATAGCCTTTGCCTTCTACCAGATCAAAGAGATGGTGAAAATGGCCCGGCAGAGCCCTGCTGTGGAGAATCAGCCTCTTCAGGAGACGAATGAACCTGTCGTACCAGCCCCTCCAACCGTGCCAACGTCCGACAGGCACACAGCAGACCAGCCTGCGGGGGCGGAGGAGCTGGCATCCCCCGAAGCTCCTCCCAGCACCCCCGCCAGTGACCCCCCAGCAGAAGTGAACCCGGCCCCGGACAACCAGGCCCATCCGCCCCCGGACCCCCCAGACAGCGTGGAGCACCCCACTCCTTTGCCAGGCAGCTTTGACTCTGCGCCACCCTTGTCTTCGACGAACCCTTTCCGCCAGCAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162700 lncRNA upstream 261860 20596431 ~ 20596752 (+) True G129756
TU162668 lncRNA upstream 362267 20464363 ~ 20496345 (+) True AMCG00001229
TU162663 lncRNA upstream 552755 20305643 ~ 20305857 (+) True G129719
TU162651 lncRNA upstream 763545 19995027 ~ 20095067 (+) True G129708
TU162636 lncRNA upstream 1076750 19781647 ~ 19781862 (+) True G129696
TU162870 lncRNA downstream 369694 21241337 ~ 21241568 (+) True G129904
TU162936 lncRNA downstream 537291 21408934 ~ 21409691 (+) True G129961
TU162949 lncRNA downstream 584376 21456019 ~ 21456860 (+) True G129972
TU162961 lncRNA downstream 669820 21541463 ~ 21541672 (+) True G129984
TU162964 lncRNA downstream 679787 21551430 ~ 21554095 (+) True G129985
AMCG00001238 mRNA upstream 2268 20847770 ~ 20856344 (+) True AMCG00001238
AMCG00001240 mRNA upstream 14385 20843118 ~ 20844227 (+) True AMCG00001240
AMCG00001235 mRNA upstream 79966 20749802 ~ 20778646 (+) True AMCG00001235
AMCG00001237 mRNA upstream 144130 20708287 ~ 20714482 (+) True AMCG00001237
AMCG00001234 mRNA upstream 159012 20687490 ~ 20699600 (+) True AMCG00001234
AMCG00001241 mRNA downstream 34728 20906371 ~ 20922714 (+) False AMCG00001241
AMCG00001243 mRNA downstream 97073 20968716 ~ 20995462 (+) True AMCG00001243
AMCG00001248 mRNA downstream 243632 21115275 ~ 21118948 (+) True AMCG00001248
AMCG00001250 mRNA downstream 309994 21181637 ~ 21203572 (+) True AMCG00001250
AMCG00001249 mRNA downstream 352962 21224605 ~ 21226842 (+) True AMCG00001249
TU162705 other upstream 181755 20611272 ~ 20676857 (+) True AMCG00001236
TU162623 other upstream 1369012 19486138 ~ 19489600 (+) True AMCG00001223
TU162506 other upstream 1716467 19043304 ~ 19142145 (+) True G129594
TU162456 other upstream 1968888 18888391 ~ 18889724 (+) False AMCG00001203
TU162312 other upstream 2300438 18555151 ~ 18558174 (+) False G129442
TU162792 other downstream 46915 20918558 ~ 20925240 (+) True AMCG00001241
TU162800 other downstream 70429 20942072 ~ 20942397 (+) True G129843
TU162840 other downstream 205492 21077135 ~ 21078870 (+) True G129877
TU162879 other downstream 399741 21271384 ~ 21276879 (+) True G129913
TU163362 other downstream 2294620 23166263 ~ 23166656 (+) True G130335

Expression Profile