RNA id: AMCG00001254


Basic Information

Item Value
RNA id AMCG00001254
length 2368
RNA type mRNA
GC content 0.42
exon number 13
gene id AMCG00001254
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 21343867 ~ 21353441 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGCTCCCAATTTAGACAACAGAGGAGGGCTCCTGGAGGGAGCAAAGTAGGAGTATGTTCACGGGCCGACTGCTAGCAGATTTGGATCTGTAAAGCTCCATGGAACAAACTGGCATGGATGTGGACCCCCCCTCTCAGGTCCCCTGTGTTGACTATGACCTAGTGATGAAAAATAAAGCAGCTCTGGAGCCTGATACAGATGTCTACACAAAATTTATGATGAACCACTGCTGCTATGATGCCATTCCAACCAGTTCCAAATTGGTAATTTTTGACACCACTTTGCAGGTGAATAAGGCCTTCTTTGCTCTGGTGGCCAATGGCGTGAGGGCAGCTCCTCTGTGGGACAATAAGATGCAGTGTTTCGTAGGGATGCTGACAATCACTGACTTCATCAACATCCTACACAGATACTACAAATCCCCCTTGGTACAGATTTATGAACTGGAAGAACATAAAATTGAAACTTGGAGAGAAGTTTACTTACAGTATTCATTAAATTCACTGATCAGCATCACACCTGATTCCAGCTTGTTTGATGCCATATATTCCCTGCTGAAGAACAAGATTCATCGATTGCCTGTGATTGACCCTGAGTCCGGGAATGTTCTTCACATCCTGACACACAAACGCATCCTCAAGTTCCTCCATATTTTTGGCTCCATGATCCCAAAGCCCCGCTTTTTGCAGAAGACAATTCAGGAAGTGGCGATTGGGACATTCAAGCAGATAGCGACTGTGCATGAGGACGCCACGGTCTACGAAGCGCTGTCAACCTTCGTGGACAGACGAGTGTCTGCCCTCCCAATCGTGAATGGAGAAGgCAAAGTGGTAGGACTCTACTCCAGGTTTGATGTGATTAATCTGGCCGCTCAGAAGACCTACAACAACCTGGACATGACGGTGAGAGAGGCCCTGCAGACCCGGGCGCACTGCTTCGAGGGCGTGCTGAAGTGCTACCTGCACGAGACTCTGGAAGTCATCATTGACCGCATTGCCAAGGCAGAGGTGCACCGCCTGGTACTTGTGGATGACCGCGACGTGGTCCGAGGAATTGTGTCCCTCTCCGACCTGCTCCAGGCTCTGGTCCTGACTCCTGCAGGTATAGACGCCCTTTTCTCTTAACTCCTTGCGGGGTTGATCATCCATCCTCAGCTAACAGCATTTCCCATACAAGACACTGCTAGCACGTCTGTCTCTAACTGTTGATGGGATACGGCAGAAGGAAGaagatattttcctttttatttcttctcccCCCTCCAAAAATGGACTACATCTCCTTTACAAGACTTTGAGTTAGCTGTAGTCTCATCTTCATCTAATTTTGGACTGactttctgttattattattattattattattattaatattattattattattattattatttcattcacTTGTACAGGATATTGTCTTTTGAATAATGAATGGGATACCAGTGTAACAAGCGAAGATCATGCCTCGTTTAACTTGCAGAGATAAATACTGGTGGATCTGTGATCGACAGATAGGATTGCTCTGTGGCAACATAGCACTGGATGAATGCCTCTAGAGACGAGTGTTAAAAGTTTTTTGGCGTGTCAGCTTGACAGGATAAAGAGGGATTGAGGCTGTGAATGACAGGGCTTTACAATTAAAGCATGAGCTGCTGAGTGACTTGTGTACAttgctgaaaacaaaatctgttctAAGATTCAATATGTTACACTGTCACGCTGGttggagttttgtttttaaatatcatcTTTCATAACATTCAGATaatttttcttaattgtatctatattttatacatCATTGCCTTTCTTAGGTATGGCATATCATATGAGTAGCagtggaaggttgtgggttaaATCCTGGTGGGGTACCCCTTACCTCAAATGCTCTactaataatacacataatacttataaatgggtaaatgtatgtaatcaaaatatacacattgtaCCAatcgctctggataagggtgtctgccaaaatttatataatactataatataataatcaggGTGGGTCTCTGCTGGTTATTAGATGATGACAGAGGGAAAAAGAAGCTTCCAATGTTGGTGTTATTTTCACTAATTCAACTCTAAACATTTGTTCAAATTGTCTGTGCATGTTGACAAACCgattctgtgatttatttattttgtgcttggtgttgtgccaaacacaaacacatggtcaatttgcttattttactAGGACAGGGCTTGAAAGATATGGACTTTAATGATCCCTACTTCTGACAGTTACACACCTACTGTGAATTACAGCTGGTTACGAGTGAACAGTTCTATGTTGAACTTCTATGTTCTATGAACTTCAATCCCTGAGGGTAGCTGAAGAATCTGTGGT

Function

GO: NA

KEGG:

id description
K07200 PRKAG; 5'-AMP-activated protein kinase, regulatory gamma subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162870 lncRNA upstream 102299 21241337 ~ 21241568 (+) True G129904
TU162700 lncRNA upstream 747115 20596431 ~ 20596752 (+) True G129756
TU162668 lncRNA upstream 847522 20464363 ~ 20496345 (+) True AMCG00001229
TU162663 lncRNA upstream 1038010 20305643 ~ 20305857 (+) True G129719
TU162651 lncRNA upstream 1248800 19995027 ~ 20095067 (+) True G129708
TU162936 lncRNA downstream 55493 21408934 ~ 21409691 (+) True G129961
TU162949 lncRNA downstream 102578 21456019 ~ 21456860 (+) True G129972
TU162961 lncRNA downstream 188022 21541463 ~ 21541672 (+) True G129984
TU162964 lncRNA downstream 197989 21551430 ~ 21554095 (+) True G129985
TU162969 lncRNA downstream 254399 21607840 ~ 21608250 (+) True G129989
AMCG00001253 mRNA upstream 3579 21319470 ~ 21340288 (+) True AMCG00001253
AMCG00001252 mRNA upstream 28221 21304273 ~ 21315646 (+) True AMCG00001252
AMCG00001249 mRNA upstream 117025 21224605 ~ 21226842 (+) True AMCG00001249
AMCG00001250 mRNA upstream 140295 21181637 ~ 21203572 (+) True AMCG00001250
AMCG00001248 mRNA upstream 224919 21115275 ~ 21118948 (+) True AMCG00001248
AMCG00001260 mRNA downstream 617858 21971299 ~ 21992332 (+) True AMCG00001260
AMCG00001259 mRNA downstream 698429 22051870 ~ 22083241 (+) True AMCG00001259
AMCG00001265 mRNA downstream 806950 22160391 ~ 22169050 (+) True AMCG00001265
AMCG00001269 mRNA downstream 836467 22189908 ~ 22238654 (+) True AMCG00001269
AMCG00001271 mRNA downstream 949089 22302530 ~ 22321173 (+) True AMCG00001271
TU162879 other upstream 66988 21271384 ~ 21276879 (+) True G129913
TU162840 other upstream 264997 21077135 ~ 21078870 (+) True G129877
TU162800 other upstream 401470 20942072 ~ 20942397 (+) True G129843
TU162792 other upstream 418627 20918558 ~ 20925240 (+) True AMCG00001241
TU162705 other upstream 667010 20611272 ~ 20676857 (+) True AMCG00001236
TU163362 other downstream 1812822 23166263 ~ 23166656 (+) True G130335
TU163702 other downstream 3080352 24433793 ~ 24454385 (+) True G130616
TU163730 other downstream 3230738 24584179 ~ 24591475 (+) False AMCG00001315
TU164194 other downstream 5503158 26856599 ~ 26863132 (+) False AMCG00001361
TU164234 other downstream 5598467 26951908 ~ 26954597 (+) True AMCG00001365

Expression Profile