RNA id: AMCG00001271


Basic Information

Item Value
RNA id AMCG00001271
length 4033
RNA type mRNA
GC content 0.42
exon number 13
gene id AMCG00001271
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 22302530 ~ 22321173 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCAGGTTTGCTGGAAACCACAAACTGTGTTGACGAAATTACCACTAAGTCCAATTTAACATTTGATATACCCCGAAACCATTACATTTTAGGTTGGGTCTCATACTAGACTTCCAGGGGTGCGGCTATTTTGAGGCACAAAGCAAATAATGgaCATAAAGTGCGGTCGATCCCTGAAAGCACACCAGTCTTCTACCAATGCTTTTCCCGAAACAGAGGCTTACTGATCAAGTAACAAGcATATGAATGGTAAGTGTCCTCACGTGAAAGTGTTAACGACTGCGCTTGGAGGATTCCATGTCTTGCTTgGACTGTTCCTGTATTTCACAGACTGCTGTAGAGACCATCAGTGTAGAGGACCATTACGAAACAGTCTGTCATCAGTATCTGGCCAATGACAGCCCAACGTGCTCCCTACCCAAGGCAGTGGCCTATGATGAAATGACAGTGTACTCCCTCGATGTCCACCACTACCAACTACTCTCAGAGCTGGGGAGAGGGTTCAACAACCTCAGCAGGGTGTGCATGGCCAGACACAGACCCAATGGGAGGCTGAATGAAGTGCTGCTCTCTCGCCTCTTCCGTCACCCCAATCTCCTCACCTCCCGCATCGTCTTCACTTCCTGCTGTCAGCTCTGTGTGATCACTCCCTTGATGGCCTATGGATCTGCAGATAATCTTTTGCAGACACACTTCCCAGACGGAATGACCAGTCACATCCTGCTCTCTGCGGAGGGGCAAGTGTACCTATCTGGACTCCACAGCCTGTACAGCATGGTGAGAGAAGGCAAGAGGTCAAAGGTGGTGTATGATGTCCCACAAAACAGCCCCGCCGTCCTGCCCTGGCTGAGCCCAGAGCTGCTTCGACAGGATCTGCATGGGTATGACGTCAAGTCTGACATTTACAGCCTGGGAATCACTGCGTGTGAGCTGGTCAGTGGGAGAGTACCTTTCCAGGACATGCACCCAACTCTGATGCTGCTGCAGAAGCTGAGAGGGTCGCACTGTTGCCTGCTTGACACGGCTCCCTTCCCCCTGGAGGGGCTGGGGCTCAAGGCCTCACGCTCAGGGGTGGACTCCGGCATTGGGGAGAGTGTAGCCACCTCCAGCATCATGAGGACCATGACGGGAGACAGACCCCAGAGCCCAGCGCCCAAGAACCACTCTGCACTGCTGCACAACCTGGTGGAGCTGTGTCTGCAGCAGCGACCAGAGAAACGGCCATCAGCAGCTGCCCTCTTGACACATGCTTTCTTCAGACAGGTTAAAACACACACGAGAGACTCCTTCCTCAGTCTGGTGTACCCTGCTGTGCCCCTCCCCAGTCCGCAGACCACACCTAGCCCCTCACAGACTGCCTTGGTGTGCCATTCCAGGTGCTCTCAGGAAGACGGGGTGTGGGATTTTTCATAGACCGGAAGGACTCTGGAGAAAAAATtgccaaaaagaaaacaacccaaTGATGTGCCAAGCGCTGTAAGCGCAAAGTCATACTGGAAgataatcaatgtttttttataacagTTTGAAGTAATTTTACTAGTGATGTGAGTGACAGTACATTGGCCATCTGTGTCTGTGGTGGTGGATTTTAGTAGATATGAATGATGGCTTCAGCTATGGCAACATTGCAGTCTCAATCCCAGTCCTGAGCCTGGCAAGGGTATAGTATCTGCAGGTTTTTTCCAAGTGTTAGTATTCAGTTACTAAATTAACTGAATAATTCTTATAACAGTCTTATTTAAGGATTTTTGCATCTGGAAAGAAGAATCAATCCAGTTAATTATGTAATCTGACTAATTACTTAGGAGAGATCTGAATTGGAACAAAATTGAGATCAAGATGCCCTTCAggtactgatttttttttttaaaaaaagctttttgggATCGGTACAAGTTTTATAATAACTTCTGTTAATCTTTTAGACTCGCTTAAAATATTGTGGCAAGTggtactttgttttttgtgaaaggGCTTTAGTTGTGCATCACCTTTAAGATGGAGCCATTGAAAATGAGAAACCAATCATGAGGAGTTTTAGGTATAATTTGATTCAGCAAGATGAACGCAGCGGTCTAATAACATCCTCTCGCTCTGGCTTTTAAGACACAGTCCTGCAAGTCATGATCATTTTTCTTCCTGGGACCAACATCTTCAGTGGATTTCAAAGGCCTGGAAGTCATAATACGGTATGTTCTTTGGAAGCACCAAGCCAACCCTTTAGAAATGAGAGACCCTAACCGCAAGACTCCGGCAACAGTCAGGAAAAGGGAAGGTGTAATCTTAGGTGCCACcagtcattttttaattggaagCAAAAAAACATCCCATAATCCCATTAGCCAAAGGTGACGTTTTGACTGactatttaaaatatggacTCTTAAGTTGTgtggtatttttaattgtttttcccccctttttgtCTTGGGGGAAACCGGCATATTTATAACTGACATTTCCCAAGCATAGTGTCTCAGTTTTTGGAGCTCCCAGCACAGATCAGATCATGTGGTAGCACTGCATCCAAGGTGCCATCCTTCCTTGTACACTGCAAACTCTGAGCCCTGTTTACCTCTGTATGTATTCTGCCTGCAAGAAATACATGAAAGTGTTTCCATCTTCATAACTTCctcaggaaaataaacaaaatttcAGCTCCATTTTAAATCGTAAACCAAAAGTAGCACCTTTTCCTTGTTACGGTTTCCTTCTGaattttctgtaacattttatattgacTACCTGCTGATGAATAGGTCAGGATCAATAAGATGAAAATAGGAACAGCAAGATTCATTCAAGATCAACTCTGTAGGTATTAATTGCAcgttatgattacattttattgtgtctgtgtctgttatCCCAGACTGAACCTGGTGCTGTAAGGCATAATGGCTTTACCGCTGCAGTTTTGGAGTTCTCTTCCTAGTCCTATTTAATACTGAAGCTAAAGTAAGGACAAACCTGGCTGGCCCATAACAACattagatgttttgttttgggttttttatagtaaaacatgtaattggCAGTTCTGTTGCCTAGTACATCTTTATCgtataatgataatgaaaaacactaaTTGTGGGTAATTACAGTTGCTTCAAAGTGTTTGTTAAGGGTATCTGAGAATACTGACAGCAGTTTTTGGTacgaatacaaaacaaacataatgcTTTTTCAGGATTGTTAGTGTTGTTATTGAAGAGCACTGTTGTTGGTCTGCCCAGATTCAACCCAGCGATCTCTGGAATGATTCCAAATCTACTTAAACAATTTATAGATTAAGACGGTGGTTATTTAGAAGTTTTGTGGCTGATCcagtacaaaaatattattgattATAATGCAGTATGAAAACCGGTATTGATATAAACCATTATTTATAGATCAAGATCATTTACACCTCAATTACAAGGGCTTAGtattctttttaataatttctataCATTTGGAATTGGCCATTATTCTCTCCCTCCCAATTTATAATCGCCAATTGTTGATCAACTTGGCTTACCACTAAAACCCCTGTACTTAATGCAGGACATGTGATTTAGACACACACATGTCCCCCAACCACACTGCCAAAGCCAGTAGTTGTGCcaggagtttattttttatttttatgaaggtAGAAATCCAAGCAGTCGCCACTTCACTGCACAACacctttacttttaaattgacTTTCACTAATTGAGCCACTTTTCCTGAAGCTTGGAGCATCTCAAGGTTATTCATTGGACATATTTGGTGCTGACTCTAAAATGTTTAGTAGTCTTCTTAGAAGCTTGTTAACAAGGggatgtatttttcatgttaagggaaacaaaaacactactTTATCATATTCTATTCAATGTTTTGTTGAGTAAATGTtctacatttgtattgtgtatctGTTGCATCCGTCAGCTGTATGCAGATGACTTAAGCCAAAAGacagaatttgaattgaaaagggAAACATGTTAGGTGTAAAGGAACATTTTTGAGAATATAATTCTTATTCTGTTTCTATGAA

Function

GO:

id name namespace
GO:0016772 transferase activity, transferring phosphorus-containing groups molecular_function

KEGG:

id description
K17532 STRADB; STE20-related kinase adapter protein beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163093 lncRNA upstream 72008 22229414 ~ 22230522 (+) False AMCG00001269
TU163085 lncRNA upstream 97405 22202030 ~ 22205125 (+) True G130090
TU163009 lncRNA upstream 322733 21978053 ~ 21979797 (+) False AMCG00001260
TU162995 lncRNA upstream 351727 21910033 ~ 21950803 (+) True G130014
TU162991 lncRNA upstream 435905 21826245 ~ 21866625 (+) True G130010
TU163121 lncRNA downstream 5467 22326640 ~ 22326878 (+) True G130125
TU163149 lncRNA downstream 178862 22500035 ~ 22500792 (+) False AMCG00001278
TU163153 lncRNA downstream 261143 22582316 ~ 22582621 (+) True G130152
TU163154 lncRNA downstream 261525 22582698 ~ 22582964 (+) True G130153
TU163145 lncRNA downstream 294111 22615284 ~ 22616157 (+) True G130144
AMCG00001269 mRNA upstream 63876 22189908 ~ 22238654 (+) True AMCG00001269
AMCG00001265 mRNA upstream 133480 22160391 ~ 22169050 (+) True AMCG00001265
AMCG00001259 mRNA upstream 219289 22051870 ~ 22083241 (+) True AMCG00001259
AMCG00001260 mRNA upstream 310198 21971299 ~ 21992332 (+) True AMCG00001260
AMCG00001254 mRNA upstream 949089 21343867 ~ 21353441 (+) True AMCG00001254
AMCG00001272 mRNA downstream 63547 22384720 ~ 22450890 (+) True AMCG00001272
AMCG00001278 mRNA downstream 178992 22500165 ~ 22530836 (+) True AMCG00001278
AMCG00001277 mRNA downstream 219177 22540350 ~ 22542253 (+) True AMCG00001277
AMCG00001275 mRNA downstream 229967 22551140 ~ 22565620 (+) True AMCG00001275
AMCG00001276 mRNA downstream 262854 22584027 ~ 22607255 (+) True AMCG00001276
TU162879 other upstream 1025651 21271384 ~ 21276879 (+) True G129913
TU162840 other upstream 1223660 21077135 ~ 21078870 (+) True G129877
TU162800 other upstream 1360133 20942072 ~ 20942397 (+) True G129843
TU162792 other upstream 1377290 20918558 ~ 20925240 (+) True AMCG00001241
TU162705 other upstream 1625673 20611272 ~ 20676857 (+) True AMCG00001236
TU163362 other downstream 845090 23166263 ~ 23166656 (+) True G130335
TU163702 other downstream 2112620 24433793 ~ 24454385 (+) True G130616
TU163730 other downstream 2263006 24584179 ~ 24591475 (+) False AMCG00001315
TU164194 other downstream 4535426 26856599 ~ 26863132 (+) False AMCG00001361
TU164234 other downstream 4630735 26951908 ~ 26954597 (+) True AMCG00001365

Expression Profile