RNA id: AMCG00001278


Basic Information

Item Value
RNA id AMCG00001278
length 561
RNA type mRNA
GC content 0.53
exon number 3
gene id AMCG00001278
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 22500035 ~ 22530836 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atggcaGATGAGCAGGAAGTTTTGAACTCAATCATGCAGGACCTGGCTGAGCTACACAGGGCCAGCCGCCCTGCCATTGCTCTCTCTGACTTGGGGAAGCCCAAGGCCTCGTCTCCCAAGAATCAGaagCGTATTCATGATGAAGAGGATGAGGAAGATGAGACCGCGGGCAGTGAGTCCCAGGAGGCCATCCCAGCTGCAGCAGGGAAACAAGTTGATGATGTTGGGGTCAAGACAGATGAATATGGAGCCAAGGATTACAGGCTGCAGATGCTCTTGAAAAAGGACCACACATCCAGGCCTATTTGGGTGGCTCCTGATGGACATATTTTCCTGGAGGCCTTCTCTCCAGTGTACAAATACGCCCAGGACTTTCTGGTTGCGATCGCCGAGCCGGTCTGTCGACCCATCCACATTCATGAATATAAGCTGACGGCCTACTCCCTGTACGCTGCCGTGAGTGTTGGGCTGCAGACGACTGACATCATTGAGTACCTGCAGAAACTGAGCAAAACGTCTGTTCCAGACGGCATCATACAGTTCATCAAGGTGAGGCCGTGA

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0032508 DNA duplex unwinding biological_process
GO:0006289 nucleotide-excision repair biological_process
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163121 lncRNA upstream 173287 22326640 ~ 22326878 (+) True G130125
TU163093 lncRNA upstream 269643 22229414 ~ 22230522 (+) False AMCG00001269
TU163085 lncRNA upstream 295040 22202030 ~ 22205125 (+) True G130090
TU163009 lncRNA upstream 520368 21978053 ~ 21979797 (+) False AMCG00001260
TU162995 lncRNA upstream 549362 21910033 ~ 21950803 (+) True G130014
TU163153 lncRNA downstream 51480 22582316 ~ 22582621 (+) True G130152
TU163154 lncRNA downstream 51862 22582698 ~ 22582964 (+) True G130153
TU163145 lncRNA downstream 84448 22615284 ~ 22616157 (+) True G130144
TU163165 lncRNA downstream 94122 22624958 ~ 22625203 (+) True G130160
TU163171 lncRNA downstream 268261 22799097 ~ 22805058 (+) True G130166
AMCG00001272 mRNA upstream 49275 22384720 ~ 22450890 (+) True AMCG00001272
AMCG00001271 mRNA upstream 178992 22302530 ~ 22321173 (+) True AMCG00001271
AMCG00001269 mRNA upstream 261511 22189908 ~ 22238654 (+) True AMCG00001269
AMCG00001265 mRNA upstream 331115 22160391 ~ 22169050 (+) True AMCG00001265
AMCG00001259 mRNA upstream 416924 22051870 ~ 22083241 (+) True AMCG00001259
AMCG00001277 mRNA downstream 9514 22540350 ~ 22542253 (+) True AMCG00001277
AMCG00001275 mRNA downstream 20304 22551140 ~ 22565620 (+) True AMCG00001275
AMCG00001276 mRNA downstream 53191 22584027 ~ 22607255 (+) True AMCG00001276
AMCG00001279 mRNA downstream 115277 22646113 ~ 22752856 (+) True AMCG00001279
AMCG00001284 mRNA downstream 500468 23031304 ~ 23033499 (+) True AMCG00001284
TU162879 other upstream 1223286 21271384 ~ 21276879 (+) True G129913
TU162840 other upstream 1421295 21077135 ~ 21078870 (+) True G129877
TU162800 other upstream 1557768 20942072 ~ 20942397 (+) True G129843
TU162792 other upstream 1574925 20918558 ~ 20925240 (+) True AMCG00001241
TU162705 other upstream 1823308 20611272 ~ 20676857 (+) True AMCG00001236
TU163362 other downstream 635427 23166263 ~ 23166656 (+) True G130335
TU163702 other downstream 1902957 24433793 ~ 24454385 (+) True G130616
TU163730 other downstream 2053343 24584179 ~ 24591475 (+) False AMCG00001315
TU164194 other downstream 4325763 26856599 ~ 26863132 (+) False AMCG00001361
TU164234 other downstream 4421072 26951908 ~ 26954597 (+) True AMCG00001365

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000024_03708794_03723637.mRNA True 2678 mRNA 0.49 15 CI01000024 3708556 ~ 3723731 (+)