RNA id: AMCG00001284


Basic Information

Item Value
RNA id AMCG00001284
length 1368
RNA type mRNA
GC content 0.57
exon number 2
gene id AMCG00001284
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 23031304 ~ 23033499 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTCTTGGATTTGGAGTcagaaaagcagagagagaaatgcaggaGACAAACGCCCATTCTGAGATTTATTTGTCCTAAAGCTCCCTGTGACTATAGCGAGTGGGGCCCCACTTGGATCCTCATCCCCTTTGTCTATCTGCTGGCATTCACTTTAGGCTCCCTAGGGAACGGCCTTGTCCTGTGGGTGTACTTGGGACATAACAGTGACTGGAGGGTCTGTGCAGAACCCCAACACCAGTCATCATGCATCCCCACACCCTGCCCTCCTTCAAGGCACCTATGCCCCACTCCCCAGCATTCTCCGGCCTTGCGCCCAGGCCGCTCCCTCACTGATGTCCTCATCGCCAGCCTGGCAGCAGCAGACCTGGCTTTTGTGCTGACCCTGCCTCTGTGGGCAGCATACACCGCATTGGGCTATGACTGGCCCTTTGGTCTTCCTCTCTGCAAAGCCAGCAGCTACCTGGTGGCCCTCAACATGTATGCTAGTGTTTTCTTCTTAACCGGGCTCAGCGTGGAGCGCTACTGTGTCATCGCTGGCCACTTCAGGGGTGCTGGAGGGAGAGGGCTGAGGAGGAGGCGGGGACTTTGGGTAGTGGTAGGCATCTGGGCCATGGCAGGGCTTTTGGCCTTACCTGCCCTGGTGTTGAGGACTGTGAGGGAGTTGGACCCCAGGGAGGTGATGGAAGACATGTGGGGGGAGATAGAAGAAGAAGACCTCAGCTCTGGCTCCCACGTATACGCCTGTGAGATGGACTATTCAGTCTTGATTTTCACTGATGACCCTGATGAGAGGGAACGATTGCATCTGCTGTGGACAGCCATTTTTGGGTTCAAATCCACCATCCTGGGCTTCCTGCTCCCCTTGGCTGTTCTTCTGCTGTGCTACTGCTCTCTGGGGCATCTCCTTTCCCGCCACTTCGGGAAGGGCCCACGGGCTGACCGGCGGAGGCAACGGCGTCTCCTGCGGGTCATTGCCACCCTTGTCCTGGCCTTCTTCCTGTGCTGGCTACCCTACCATGCCAACAAGAGCTTGGCCATCCTCACTGAGCTGGAGGTCATCCCCTTCTACTGCCCCTTTGACAGGGTTTTAGTTCTTGCCCACCCTTATGCCACCTGCCTGGCGTACGTAAACAGCTGCCTAAACCCACTTCTCTATGCCTGCTGTGACCCCGCTTTCCGACGCCGCTGCAAATCTCTATGGAGACGGTGCCCAGGCAGAGGGGGGcaacaggaggaggaggaggaggaggaggaggaggaagaggaggaggaggccagCAAGAGCTCAGCAGTTACTCAGCAGACTGGGTCACGTAGCAATACAGAAAATGGCAAGGGAGCGGAGAGGGAGCTGGTACAAGGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163171 lncRNA upstream 226246 22799097 ~ 22805058 (+) True G130166
TU163165 lncRNA upstream 406101 22624958 ~ 22625203 (+) True G130160
TU163145 lncRNA upstream 415147 22615284 ~ 22616157 (+) True G130144
TU163154 lncRNA upstream 448340 22582698 ~ 22582964 (+) True G130153
TU163153 lncRNA upstream 448683 22582316 ~ 22582621 (+) True G130152
TU163374 lncRNA downstream 181438 23214937 ~ 23217500 (+) True G130346
TU163376 lncRNA downstream 190533 23224032 ~ 23224597 (+) True G130348
TU163399 lncRNA downstream 247312 23280811 ~ 23281334 (+) True G130365
TU163484 lncRNA downstream 582881 23616380 ~ 23620977 (+) False AMCG00001292
TU163485 lncRNA downstream 582881 23616380 ~ 23620977 (+) False AMCG00001292
AMCG00001279 mRNA upstream 278448 22646113 ~ 22752856 (+) True AMCG00001279
AMCG00001276 mRNA upstream 424049 22584027 ~ 22607255 (+) True AMCG00001276
AMCG00001275 mRNA upstream 465684 22551140 ~ 22565620 (+) True AMCG00001275
AMCG00001277 mRNA upstream 489051 22540350 ~ 22542253 (+) True AMCG00001277
AMCG00001278 mRNA upstream 500468 22500165 ~ 22530836 (+) True AMCG00001278
AMCG00001285 mRNA downstream 67408 23100907 ~ 23119955 (+) True AMCG00001285
AMCG00001292 mRNA downstream 531652 23565151 ~ 23685121 (+) False AMCG00001292
AMCG00001294 mRNA downstream 688324 23721823 ~ 23759069 (+) True AMCG00001294
AMCG00001300 mRNA downstream 869829 23903328 ~ 23913809 (+) True AMCG00001300
AMCG00001298 mRNA downstream 914950 23948449 ~ 23990082 (+) True AMCG00001298
TU162879 other upstream 1754425 21271384 ~ 21276879 (+) True G129913
TU162840 other upstream 1952434 21077135 ~ 21078870 (+) True G129877
TU162800 other upstream 2088907 20942072 ~ 20942397 (+) True G129843
TU162792 other upstream 2106064 20918558 ~ 20925240 (+) True AMCG00001241
TU162705 other upstream 2354447 20611272 ~ 20676857 (+) True AMCG00001236
TU163362 other downstream 132764 23166263 ~ 23166656 (+) True G130335
TU163702 other downstream 1400294 24433793 ~ 24454385 (+) True G130616
TU163730 other downstream 1550680 24584179 ~ 24591475 (+) False AMCG00001315
TU164194 other downstream 3823100 26856599 ~ 26863132 (+) False AMCG00001361
TU164234 other downstream 3918409 26951908 ~ 26954597 (+) True AMCG00001365

Expression Profile