RNA id: AMCG00001292


Basic Information

Item Value
RNA id AMCG00001292
length 2661
RNA type mRNA
GC content 0.51
exon number 18
gene id AMCG00001292
representative False

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 23565151 ~ 23685121 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGCAGTGGAAGTCGCCTGCGCAATAAGGGCAGAAAcaaccGTGGTCacggaaataaaaataactgtttcTTCAAAGAAGACTGCGAAACTGAAATTAagGTAGCTTTAGAAAATGCTGCCAAAGATGAAACCACTCTGGTGGAGAGTCTTGGAAGTGAGGCTCGGGGGCACAAAGCAGCCATGGAGCAAGTCAATGATTATGGTAATATCTCCTACGAGGACTACGAGTATATGGATGAGGTGGAAGGACCCAAAGATCATGTCCAAAGTGAAGTTTTACACATAATCTCCGTGGTCGTATACAGCATTTCTTTTGTGTTGGGCATAATTGGGAATGGGGTGGTGATCTGGGTGATCGGTTGGAAACAAAAGAAGACGATCAACACCATTTGGCTGTTGAACTTGGCTGTGgctgattttgtgtttgtcctCTTCCTGCCCCTGTCTATCGATTACGTGCTCAAGGACTTCCACTGGAACTTTGGCAAAGCCTTCTGCAAGATCAACTCCTTCGTAACAGTGGCCAATATGTTCGCCAGTGTCTTCTTCCTCACTGTCATCAGTGTGGACCTCTACATCTCTGTGATGCACTGTGCCTGGTCTGAGAGACACCGTACCCTTACCAAAGGCAGGTGGGTGTGTGCCGGAGTCTGGGTCCTCGCCATCACCCTCAGCATCCCTAGCCTGGTTTTCCGGGACACTGTGCAACTCACTGGTAAGACAGTCTGCTTCAACAACTTCCATGACACTGACATACACCTCCTGGCTGTCAGGCACATTACTACTGTTTGTCTGCGGATGCTGTTTGGGTTCCTCCTCCCCTTCACTGCCATCACAGTGAGTTCCATTCTGCTAGTGGTGAAAATGAGGAACTCCTCCGGTACCTCCTCTATGAGATTTTCTGGCTTCTCCAGGACAGCCACTGCCATCATCCTGGCATTCTTCTTCTGCTGGGCCCCATtgcatgttttcagtttaatggAGATCTCCATTCATGCAGGCTCCAGGCTCCACAATGTCCTCCGCACTGGCTTCCCCTTAGCTACCAGCCTGGCCTTTTTCAACAGTTGCCTAAACCCCATCCTTTATGTCCTCACGGGGAAGAAGATTAAGAAAGTAATCCGCAAGTCCTGTCTGGAGATCACCAAACATGCTCTGAGAGACATCACCCAGACAGGCTCTGACATTGAGTCCTTGTCTATGAAGATCAACAGCACTGAAGGCAAATGCGAAGGACAGAAGGCTGAGAAAAAAAGGAGAGCGGCTCGCACTGCTGCTACAGCAGCTAGCAACCTAGTGGAGGTCTTTGTGGATGGGAAGTCTGTCATGGTAGAACCAGGGACTACAGTGCTTCAGGCCTGCGAGAAAGTTGGAGTGCAGATCCCTCGCTTCTGTTATCATGACCGTCTCTCCGTTGCTGGAAACTGTCGAATGTGTCTCGTGGAGATTGAGAAAGCACCCAAGCCGGTGGCCGCATGTGCTATGCCTGTCATGAAAGGCTGGAACATCTTGACCAACTCGGAGAAGACCAAGAAAGCCAGGTTTGCCAGTGAGGTGGCAGGGGTGGATGACCTGGGCACTACCGGGAGAGGAAATGAGATGCAGGTGGGCACCTACGTGGAGAAGATGTTTATGTCAGAGTTGTCGGGGAATGTGATTGACATCTGCCCCGTGGGAGCATTGACATCAAAGCCCTATGCCTTCACCTCCAGGCCATGGGAGACCAGAAAGACTGAGTCTATTGATGTACTGGATGCAGTGGGTAGTAACATCCTGGTCAGCACACGTGGGGGAGAGGTGATGAGGGTCCTGCCCAGACTGAATGAAGACGTCAATGAGGAGTGGATCTCTGACAAAACCCGGTTTGCATATGATGGTTTGAAGCGGCAGCGTCTGACCCAGCCTATGGGAGCTCAGGGAATGGACATCGCAGCCATAGCAGGGGGGCTTGTGGATGCAGAGGCCCTGGTTTCACTGAAGGATCTGCTGAACAGACTGAACAGTGACAACCTGTGCACTGAGGAGTTGTTCCCCATGGCTGGTGCTGGCACTGACCTGCGCTCCAACTACCTTCTGAACACTCGCATTAGTGGTGTTGAGGAAGCAGATCTGCTGTTGCTGGTGGGCACCAACCCGCGATTTGAGGCACCTCTTTTTAATGCACGAGTGCGAAAGAGCAGTGTGGATCTGAGTTATACCTATGACCATCTGGGGGACACTGCTCAAGTGTTGCATGACCTCGCCTCAGGGAAGCACCCTTTCAGCAAGGTTCTGAGCCAGGTGAAAAAGCCCATGGTTGTTGTGGGCAGTGGATGTCTGCAGAGGGCTGACGGAGCAGCTATCCACGCTGCAGTTTCTGCCATAGCACAGAGTGCCAGGGCTAGCAGTGGAGTCCAGGACAACTGGAAGGTTCTCAATGTTCTCCACAGGGCTGCAAGTCAGGTAGCAGCACTCGATCTTGGCTACAAGCCCGGAGTAGAAGTGATCCGGAAGAACCCTCCCAAGCTTTCTGGGGTAACCTTGCCCTATGATAGTCTTAACGAAGTACGAGAGAGGCTGGCAGAAGTGGCTCCCAACCTTGTGCGTTACGATGACATTGAGGAGGCCAACTACTTCAGGCAGGCTAATGAACTTTCAAAGCCTGGGATCCAGGCTTGA

Function

GO:

id name namespace
GO:0042773 ATP synthesis coupled electron transport biological_process
GO:0016020 membrane cellular_component
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0051536 iron-sulfur cluster binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163399 lncRNA upstream 283817 23280811 ~ 23281334 (+) True G130365
TU163376 lncRNA upstream 340554 23224032 ~ 23224597 (+) True G130348
TU163374 lncRNA upstream 347651 23214937 ~ 23217500 (+) True G130346
TU163171 lncRNA upstream 760093 22799097 ~ 22805058 (+) True G130166
TU163165 lncRNA upstream 939948 22624958 ~ 22625203 (+) True G130160
TU163512 lncRNA downstream 43884 23729005 ~ 23729229 (+) True G130461
TU163544 lncRNA downstream 170599 23855720 ~ 23856116 (+) True G130492
TU163591 lncRNA downstream 238090 23923211 ~ 23923877 (+) True G130531
TU163590 lncRNA downstream 239757 23924878 ~ 23926011 (+) True G130530
TU163619 lncRNA downstream 367701 24052822 ~ 24120461 (+) True G130552
AMCG00001285 mRNA upstream 445196 23100907 ~ 23119955 (+) True AMCG00001285
AMCG00001284 mRNA upstream 531652 23031304 ~ 23033499 (+) True AMCG00001284
AMCG00001279 mRNA upstream 812295 22646113 ~ 22752856 (+) True AMCG00001279
AMCG00001276 mRNA upstream 957896 22584027 ~ 22607255 (+) True AMCG00001276
AMCG00001275 mRNA upstream 999531 22551140 ~ 22565620 (+) True AMCG00001275
AMCG00001294 mRNA downstream 36702 23721823 ~ 23759069 (+) True AMCG00001294
AMCG00001300 mRNA downstream 218207 23903328 ~ 23913809 (+) True AMCG00001300
AMCG00001298 mRNA downstream 263328 23948449 ~ 23990082 (+) True AMCG00001298
AMCG00001297 mRNA downstream 387308 24072429 ~ 24090849 (+) True AMCG00001297
AMCG00001299 mRNA downstream 495129 24180250 ~ 24207621 (+) True AMCG00001299
TU163362 other upstream 398495 23166263 ~ 23166656 (+) True G130335
TU162879 other upstream 2288272 21271384 ~ 21276879 (+) True G129913
TU162840 other upstream 2486281 21077135 ~ 21078870 (+) True G129877
TU162800 other upstream 2622754 20942072 ~ 20942397 (+) True G129843
TU162792 other upstream 2639911 20918558 ~ 20925240 (+) True AMCG00001241
TU163702 other downstream 748672 24433793 ~ 24454385 (+) True G130616
TU163730 other downstream 899058 24584179 ~ 24591475 (+) False AMCG00001315
TU164194 other downstream 3171478 26856599 ~ 26863132 (+) False AMCG00001361
TU164234 other downstream 3266787 26951908 ~ 26954597 (+) True AMCG00001365

Expression Profile