RNA id: AMCG00001294


Basic Information

Item Value
RNA id AMCG00001294
length 3320
RNA type mRNA
GC content 0.59
exon number 9
gene id AMCG00001294
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 23721823 ~ 23759069 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGATGTTCACAAGGACAAGAGTCACGTGATGTATGAAGGCAAACACATACACTTCTCGGAGGTGGACAATAAGCCATTGTGCTCCTATAGCCCCAAGCTCTGCAAGCAGCGCCGACTCAACGGCTACGCCTTCTGTATCCGCCACGTCCTTGAGGACAAGACCGCCCCCTTCAAGCAATGTGAATATGTGGCCAAGTATAACAGCCAGCGCTGCACCAATCCCATTCCCAAATCGGAAGACCGCAGGTACTGCAACAGCCACCTCCAAGTGCTGGGGTTCATCCCGAAGAAAGAGCGCAAGAAGAAGAATGACCCGATGGAGGACATGCGCTCACGGCCTCACCTGGAGTCTGTCGCCCTGAACATCACAGTGCCCTCCCTGGCTCTGAAGACCCCTAACGGGCTGGACgagcctcccctctccccacCCCGCACCCGGTTGCTGGCACCCTTCCCTGATGGCGAGCTGCTGGACCCGTTTGCCTTCCACGAGGATGACACCGATGGGGATGAGGCAGCCCCCCGCAGAGGCTCGGCTGTCAAGAAGAAACTCCAGAGCCGCCTGGTGCTAAACCAGCGGCTGCGgctcagagagactgagatcCTCAAAACCCCCTTAGAGCACTTTAGCCCCTCTCCTGCACCCTGTCCAGCTCTTCAGCAATCGCAGCAACCACAACAGCACCCTTCGCCCCCACCACAGTCCCACCTTCCcccgcagcagcagcaacagcccCTCCCACCCACGCCCCAGCACTCCTACCCACTCCCCCTGCCCTCTGCTTCCCCGCCGTGCCTCCCTGGACTGCCGCAGGGCTTAATATGCAAGCCGCCACCACCTCAGACCGCCATTCTGTCCACCCAGGGGTTAGCTTCCAGCTCCCTGCAGGCTGTGGCCCAGCCACCCGGTCAGTCTCCCAGCAAGAAACCTCTGGGGGGAGGTCTGTtcctccccccctccacactgcctctgcctctgccacCCCTGGCAGGTACTACACCAGCCGACACGCCCAGACCCCACATGATTATCATCAAGCCCAACGTCTTCACTCCTCCACCTGCCTGCCTCACCAGGCTACAAAGGCTTGTCAAATTGTGCTCACATCTCCAGCAGCAAGAAGGGGACCTCTTCCCACATTTAGGAACATCAAGGAGTAACAGGCTGTCTCGGCTCTGCACTTACTTGCAGCAGAAATATAAGCATCTCTGTCGTTTGGAGAGAGCAGCAACTCGGCAAAAGAGATGCCGCCATGCCTTTCGAAAGGCCCTGCTGCATGCTGCCAGCAAGGACCCTGACTGTGCCGGGCAGCTGATCCAGGAGCTCCGCATGGTTGCCCAGACACAGAGCAGCACCAGGACATCAGATTGGCATGACACAGATGCAGGGATCTGCACAGGAAACACTAAGGGCCAGGCGTGCACCAGTCAAGCGCTGCCCTTCACCAGACACTGTTTCCAGCACATTTTGTTGAATCGCTCGCAGCAGCTGTTCTCCAGTTGCACGGCCAAGTTTGCAGACGGTCAGCAGTGTTCCATTCCAGTTTTCGACATCACACACCAGACTCCACTCTGCGAGGAACATGCCAAGAAAATGGACAATTTCCTGCGGGGAGATAGCAACCGCAGAgttcagcaccagcagcagcgCAAGCCCAGGAAGAAGACAAAGCCACCGGCGCTCaccaaaaaacacaagaagaagCGAAGAAGAGGCCCCCGCAGGCCACAGAAACCCATCCCTCCCGCTGTGCCACAGGGGAACCTGGGCATGCCCTCCAGCCTTGCACTGCCACCACAGGCCTCCAGCATCAGGAGCCCATCGACCCCAGACTTAAGTACCGACGAGCTTCCTGATGACATCACCAATGACATCACAGACATTCCAAATGACCTTGAGCTGAATCAGGAGGACTTTTCTGATGTGTTGCCAAGGCTGCCTGATGATCTTCAGGACTTTGATCTGTTTGAAGgtAAAAACGGCGAGCTGCTGCCTACCACAGAGGAGGCTGAGGAGCTGGAGAGGGCCCTGCAGGCCATGACCTCCTACACGGCCTCCCTGGAGTGCCTAAGCTCCATGGGAGAGTTGAGTCAGCCTGACCCCGTGGGTGTGCAAGAGCTCTCGGACCACCGGGCGATGGCGGTTTTCTCTGGTTCTGGTGTGCCTGGTGGTGGCATGGCCTCCCTGGGTCGTGCAGTCGGGAACAGTGAGCTGGGGGATCTGCTGAATGGTCGCATTCCTCCTGAGAACTTCTCTAGCCTGGAGCTGGATGACAACCTGCTTCACTCATCAGGGGCCCAGTTTTCCACACCATCATCTCCCCAGCCGCCACCACGTCCCCACCCCACCTCCGCCACCAGCATCAGCCTTACTTCTGCTGCCCCACCCACGGCATCCACTTCCAATGTGCTACTGAAACATAGCCCCCTGACTGAGCGAACATTCCTCCCGCCCTTCCCTGGGCTCCATGAGGCGGCTGGACAGTCCACCTCACGGACCCAGACCTCTCACCTGTTGGCCAAACCTGAAGAGCTCATCCCACCCCGACAGCAATACACCAGTGAGCACTCGCACTCCTCCACTCACGACGGACACTACAGCAGTGAACACGTGCCATCCCCCTACAGCGACCGCATCACCTCCCCCCATCCCTCTGCCTACCCCTCTGGTGACGGTGGGGGCAGCACATTGGCAGCTAGCTTTCAGCCAGAGCCCCCACTCTTGCCAACACCCATTCTCCAAGGCCAGCTGGAGGTGCCCATCAGCGGGGTGCCAGgcaacccccgccccccctgGAACAACCTACCCCTAGCCTTGGCTGACCCTACCCAGTTTGGCAACCTCATTGGTCCTGAAGGCCATCTGATCTCCACCTCGCTCTCTAcacccccctccacctcccatTCGGTGATTATCCAGCCCACGGCCGCCCTCTCAGCACTGCCCCAGACAAATTTCACCGGCCTGGCCGCTGCAGTGGGCTCCTCGGCCACACCCCCTTCCTCTGCCTCCCCTTCATCTTCTTCTCCGCACGACCTCCTGACCTCGAACCCTCCCAAGCAGCAACTTCCTCAGTTCAGCGCTGCTTTTGGTCACCAACTGGCCTCACACAGCGGAATTCCCAAGGACGTGCAGCCCAGCCACAGCTCCACTGCGCCCCCCACTGGCTTCTCTGTCGCAGGCGCCAGAGCCGCAACTGCCAGCAGCGTGACGCCACCTTTCACCACACATTTTGTTTTAGAGGTCACTGAGTTGCTCTCTATTGTGAATGCTTCTAGTAAGAAAATCTACtcagaaaagaagaaattatacaagaat

Function

GO: NA

KEGG:

id description
K11668 INO80D; INO80 complex subunit D

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163484 lncRNA upstream 100846 23616380 ~ 23620977 (+) False AMCG00001292
TU163485 lncRNA upstream 100846 23616380 ~ 23620977 (+) False AMCG00001292
TU163486 lncRNA upstream 100846 23616380 ~ 23620977 (+) False AMCG00001292
TU163487 lncRNA upstream 100846 23616380 ~ 23620977 (+) False AMCG00001292
TU163488 lncRNA upstream 100846 23616380 ~ 23620977 (+) False AMCG00001292
TU163544 lncRNA downstream 96651 23855720 ~ 23856116 (+) True G130492
TU163591 lncRNA downstream 164142 23923211 ~ 23923877 (+) True G130531
TU163590 lncRNA downstream 165809 23924878 ~ 23926011 (+) True G130530
TU163619 lncRNA downstream 293753 24052822 ~ 24120461 (+) True G130552
TU163703 lncRNA downstream 665496 24424565 ~ 24437017 (+) True AMCG00001312
AMCG00001292 mRNA upstream 36702 23565151 ~ 23685121 (+) False AMCG00001292
AMCG00001285 mRNA upstream 601868 23100907 ~ 23119955 (+) True AMCG00001285
AMCG00001284 mRNA upstream 688324 23031304 ~ 23033499 (+) True AMCG00001284
AMCG00001279 mRNA upstream 968967 22646113 ~ 22752856 (+) True AMCG00001279
AMCG00001276 mRNA upstream 1114568 22584027 ~ 22607255 (+) True AMCG00001276
AMCG00001300 mRNA downstream 144259 23903328 ~ 23913809 (+) True AMCG00001300
AMCG00001298 mRNA downstream 189380 23948449 ~ 23990082 (+) True AMCG00001298
AMCG00001297 mRNA downstream 313360 24072429 ~ 24090849 (+) True AMCG00001297
AMCG00001299 mRNA downstream 421181 24180250 ~ 24207621 (+) True AMCG00001299
AMCG00001309 mRNA downstream 497767 24256836 ~ 24286635 (+) True AMCG00001309
TU163362 other upstream 555167 23166263 ~ 23166656 (+) True G130335
TU162879 other upstream 2444944 21271384 ~ 21276879 (+) True G129913
TU162840 other upstream 2642953 21077135 ~ 21078870 (+) True G129877
TU162800 other upstream 2779426 20942072 ~ 20942397 (+) True G129843
TU162792 other upstream 2796583 20918558 ~ 20925240 (+) True AMCG00001241
TU163702 other downstream 674724 24433793 ~ 24454385 (+) True G130616
TU163730 other downstream 825110 24584179 ~ 24591475 (+) False AMCG00001315
TU164194 other downstream 3097530 26856599 ~ 26863132 (+) False AMCG00001361
TU164234 other downstream 3192839 26951908 ~ 26954597 (+) True AMCG00001365

Expression Profile