RNA id: AMCG00001311


Basic Information

Item Value
RNA id AMCG00001311
length 2364
RNA type mRNA
GC content 0.51
exon number 4
gene id AMCG00001311
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 24480969 ~ 24490636 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTTCTGGGCTCCACCAGCGCATTGCAGCAAAGCACCTATAACTGGTTTGAAAAGTTGTTCCGCCTGGCActggatatttttaaaactgcgTGTCTGTGGGAGTGTCGGAAACCCCACTGGTCCCCTGACTGGGGCTCCTCCTCTCGTGTTTGCCCAGCATATATAACCCAGCAGCCGGCAGAGCTCCACGAGTCACTCACGGAGACCACTTTGCAGCGTGAATGCATTTCTGTACATGTTGGCCAAGCCGGAGTCCAGATGGGCAATGCCTGCTGGGAGCTTTACTGCCTGGAGCACGGGATCCAGCCTGATGGCCAGATGCCCAGCAACAAACCTGTGGGAGGGCATGACGATTCCTTCACCACCTTCTTTAGCGATACAGGGGCTGGTAAATACGTGCCCAGGGCAATCTTTGTTGACCTGGAGCCCACCGTCATTGatgAGGTGCGCACAGGGACCTACCGCCAGCTGTTCCACCCTGAGCAGCTCATCACTGGCAAAGAGGACGCTGCCAACAACTACGCCCGTGGGCACTACACCATCGGCAAGGAGATCATTGACTCTGTTCTGGACAGGATCCGCAAACTGGCTGACCAGTGCACAGGCCTCCAAGGGTTCCTGGTATTTCACAGCTTCGGTGGTGGTACTGGCTCTGGTTTCACCTCCCTGCTGATGGAGCGTCTCTCTGTAGATTTTGGTAAGAAGTCCAAGCTGGAGTTTGCGGTCTACCCAGCTCCCCAGGTGTCCACAGCTGTGGTTGAGCCCTACAACTCCATCCTGACCACCCACACCACCCTGGAGCACTCTGACTGCGCCTTCATGGTCGACAATGAGGCCATCTATGACATCTGCCGCAGAAACCTGGACATTGAGCGTCCATCCTATACCAACCTCAATAGGCTGATCAGCCAGATTGTCTCCTCCATCACCGCCTCCCTGCGCTTCGACGGTGCCCTGAATGTGGACCTGACGGAGTTCCAGACCAACTTGGTGCCCTACCCCCGTATCCACTTCCCCCTGGCCACCTACGCTCCAGTGATCTCTGCTGAGAGGGCCTATCATGAGCAGCTGTCTGTGGCTGAGATCACCAACTCCTGCTTTGAGCCAGCCAACCAGATGGTGAAGTGTGACCCCCGTCACGGCAAGTACATGGCCTGCTGTCTGCTGTACCGTGGAGATGTGGTGCCCAAGGATGTTAATGTTGCCATCGCCACCATCAAGACCAAGAGGAGCATCCAGTTTGTGGACTGGTGTCCCACTGGCTTCAAGGTGGGCATCAACTACCAGCCCCCCACCGTGGTGCCTGGGGGCGACCTGGCCAAGGTGCGGAGGGCTGTGTGCATGCTGAGCAACACCACTGCCATTGCCGAGGCCTGGGCCCGCCTGGACCACAAGTTCGACCTGATGTACGCCAAGCGTGCCTTTGTCCATTGGTATGTGGGAGAGGGCATGGAGGAGGGCGAGTTCTCTGAGGCCAGAGAGGACATGGCAGCCCTGGAGAAGGACTATGAAGAGGTGGGCATCGACTCTTttgaaggagaagaggaaggagaagagTACTAAGAGAGAAGCCCAAGTGAagccagagagggagagatttgCTAGATGTGCCAAATGCAGACGATGCTAGAAGATGACATTGCTTGCTTGGAAAAAATTAATCGAATCCAAAGTCCTTAATCTCTCCATAATCAAAGAATAACCTACAAGtaaaaaatacagctgttgGAATACAGTTCCTAGTATCACATAAAACCAATCTATTAACCACAGTAATTTGGTTTCCAAGAATGTCTAAACCCAAGTGTCCAGATATTTCTGGTTTTTGAGAAGAATTTACCATCCCTAGATTGTAAAGAATCTGTTTTCAGGCTCTATTGTTATTCTTAAGGAGACAAAGTTGGACTtgtatcagtttattttcaaacttCTCTGTGTATAGTTCCCCACACCTGCAAAAATGCACATTCTGAACCCAACCCATCACTTGAGACCATTACAAATTGGTCTGCTTGGGCTGTTTGCACAGTTCAGTCCTCAATCTGCAGGAACAATCCTATTTGTTCATTCAACACAAACTAAAATTATTTGGTGCAAAGGAAAATGGACATTCAGTGAGTCTCTCGTTGGCGAACCACCGCAATTGGCTGCCAAGTGCTTGCCCTGAATTGCTGGAAATCTTTTGGGTGAAACACCCATgttttgggtttatttatttcagtgggaCTTTAGAAACACTCATGTTGCTGCTTGTTTCTGTTACCAagtgcaatattttatttgggaAACGCTGATGCATACAGAACCTGTTGTGAATGTCGGAAGCTCTTACTTTTGTAAATAAACGTGTTAAACCCAGAA

Function

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG:

id description
K07374 TUBA; tubulin alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163703 lncRNA upstream 43952 24424565 ~ 24437017 (+) True AMCG00001312
TU163619 lncRNA upstream 360508 24052822 ~ 24120461 (+) True G130552
TU163590 lncRNA upstream 554958 23924878 ~ 23926011 (+) True G130530
TU163591 lncRNA upstream 557092 23923211 ~ 23923877 (+) True G130531
TU163544 lncRNA upstream 624853 23855720 ~ 23856116 (+) True G130492
TU163746 lncRNA downstream 260483 24751119 ~ 24751414 (+) True G130648
TU163787 lncRNA downstream 532043 25022679 ~ 25023049 (+) True G130684
TU163792 lncRNA downstream 565985 25056621 ~ 25056978 (+) True G130689
TU163795 lncRNA downstream 596025 25086661 ~ 25086898 (+) True G130692
TU163798 lncRNA downstream 632958 25123594 ~ 25126079 (+) True G130695
AMCG00001313 mRNA upstream 25840 24447621 ~ 24455129 (+) True AMCG00001313
AMCG00001312 mRNA upstream 34736 24436490 ~ 24446233 (+) False AMCG00001312
AMCG00001302 mRNA upstream 129322 24322671 ~ 24351647 (+) True AMCG00001302
AMCG00001309 mRNA upstream 194334 24256836 ~ 24286635 (+) True AMCG00001309
AMCG00001299 mRNA upstream 273348 24180250 ~ 24207621 (+) True AMCG00001299
AMCG00001310 mRNA downstream 6022 24496658 ~ 24502375 (+) True AMCG00001310
AMCG00001314 mRNA downstream 77729 24568365 ~ 24576371 (+) True AMCG00001314
AMCG00001315 mRNA downstream 96702 24587338 ~ 24606472 (+) True AMCG00001315
AMCG00001317 mRNA downstream 155216 24645852 ~ 24659929 (+) True AMCG00001317
AMCG00001319 mRNA downstream 212007 24702643 ~ 24861705 (+) True AMCG00001319
TU163702 other upstream 26584 24433793 ~ 24454385 (+) True G130616
TU163362 other upstream 1314313 23166263 ~ 23166656 (+) True G130335
TU162879 other upstream 3204090 21271384 ~ 21276879 (+) True G129913
TU162840 other upstream 3402099 21077135 ~ 21078870 (+) True G129877
TU162800 other upstream 3538572 20942072 ~ 20942397 (+) True G129843
TU163730 other downstream 93543 24584179 ~ 24591475 (+) False AMCG00001315
TU164194 other downstream 2365963 26856599 ~ 26863132 (+) False AMCG00001361
TU164234 other downstream 2461272 26951908 ~ 26954597 (+) True AMCG00001365

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00000116 False 1616 mRNA 0.54 4 NC_007112.7 5402476 ~ 5419116 (+)
grasscarp (Ctenopharyngodon idella) CI01000299_02696797_02704180.mRNA True 1732 mRNA 0.52 5 CI01000299 2696632 ~ 2704220 (+)