RNA id: TU163703


Basic Information

Item Value
RNA id TU163703
length 955
lncRNA type sense_over
GC content 0.47
exon number 2
gene id AMCG00001312
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 24424565 ~ 24446233 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTACAATATCATACTTAATTCTTTCCCACTAGAATGATCCGAGACATGGTTTTACAAAGTTGAAACAAGACTAAGTCGACTCACCAGCTTGCGTGTCCTGTCCAGCACCAGGTCGATGATCTCTTTGCCGATGGTGTAGTGCCCGCGGGCGTAGTTGTTGGCAGCGTCCTCTTTGCCAGTGATGAGCTGCTCAGGGTGGAACAGCTGGCGGTAAGTCCCTGTGCGCACCTCATCTGGGAAGAGAGCAGGAAGGGGTTAACCGGTGCTGACCCAAACAGCAGCTCATCCCACAACATTGATATGGTAGTGGGTTCATTGTTCATAAAGTTATCCAGATCCTTAATGCTGGTGAAAGTGACTTTTGAAAGCAGGATGCTGATAGTGTCTAGGTATCTGTGAGCACAGTGCCTGTTGGTCAGTGAACAAAATGAAGTCATATGGGCAGCCCCTGCTTACCGATGACAGTGGGCTCCAGGTCCACAAAGACAGCACGGGGGACGTGCTTGCCTGCCCCCGTCTCACTGAAGAAGGTGTTGAAGGAGTCGTCCCCTCCTCCGATGGTCTTGTCACTGGGCATCTGGCCATCAGGCTGGATCCCATGCTCCAGACAGTACAACTCCCAGCAGGCATTGCCCATCTGGACTCCGGCTTGGCCGACATGCATAGAGATACATTCACGctgtaaaggaaaaataagtcacaaattatattttctgtacagATAATCGACATTCATTGCAGGCATGTGTGCAATTATTAAATTCACAGAGTAAAAAAGACAAGCTAATCATTTTATCCTTAGCTGGTTGTAAGTAAAAGtagttgaaactgaaaatacattaagtTTACAGTATGGACAGAAACCGAATGGTGACCATAAATGCTGAATCAACTGAGGATTTCAAAGCAGATTTTAGATCTGCTAAATCAGTAAAAGCCTCCGCCCACAGCCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163619 lncRNA upstream 304104 24052822 ~ 24120461 (+) True G130552
TU163590 lncRNA upstream 498554 23924878 ~ 23926011 (+) True G130530
TU163591 lncRNA upstream 500688 23923211 ~ 23923877 (+) True G130531
TU163544 lncRNA upstream 568449 23855720 ~ 23856116 (+) True G130492
TU163512 lncRNA upstream 695336 23729005 ~ 23729229 (+) True G130461
TU163746 lncRNA downstream 314102 24751119 ~ 24751414 (+) True G130648
TU163787 lncRNA downstream 585662 25022679 ~ 25023049 (+) True G130684
TU163792 lncRNA downstream 619604 25056621 ~ 25056978 (+) True G130689
TU163795 lncRNA downstream 649644 25086661 ~ 25086898 (+) True G130692
TU163798 lncRNA downstream 686577 25123594 ~ 25126079 (+) True G130695
AMCG00001302 mRNA upstream 72918 24322671 ~ 24351647 (+) True AMCG00001302
AMCG00001309 mRNA upstream 137930 24256836 ~ 24286635 (+) True AMCG00001309
AMCG00001299 mRNA upstream 216944 24180250 ~ 24207621 (+) True AMCG00001299
AMCG00001297 mRNA upstream 333716 24072429 ~ 24090849 (+) True AMCG00001297
AMCG00001298 mRNA upstream 434483 23948449 ~ 23990082 (+) True AMCG00001298
AMCG00001313 mRNA downstream 10604 24447621 ~ 24455129 (+) True AMCG00001313
AMCG00001311 mRNA downstream 43952 24480969 ~ 24490636 (+) True AMCG00001311
AMCG00001310 mRNA downstream 59641 24496658 ~ 24502375 (+) True AMCG00001310
AMCG00001314 mRNA downstream 131348 24568365 ~ 24576371 (+) True AMCG00001314
AMCG00001315 mRNA downstream 150321 24587338 ~ 24606472 (+) True AMCG00001315
TU163362 other upstream 1257909 23166263 ~ 23166656 (+) True G130335
TU162879 other upstream 3147686 21271384 ~ 21276879 (+) True G129913
TU162840 other upstream 3345695 21077135 ~ 21078870 (+) True G129877
TU162800 other upstream 3482168 20942072 ~ 20942397 (+) True G129843
TU162792 other upstream 3499325 20918558 ~ 20925240 (+) True AMCG00001241
TU163730 other downstream 147162 24584179 ~ 24591475 (+) False AMCG00001315
TU164194 other downstream 2419582 26856599 ~ 26863132 (+) False AMCG00001361
TU164234 other downstream 2514891 26951908 ~ 26954597 (+) True AMCG00001365

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU140933 True 928 lncRNA 0.46 3 CI01000024 5224428 ~ 5234193 (-)
rainbow trout (Oncorhynchus mykiss) TU345364 True 331 lncRNA 0.51 2 NC_048567.1 82833072 ~ 82851751 (-)