RNA id: AMCG00001314


Basic Information

Item Value
RNA id AMCG00001314
length 849
RNA type mRNA
GC content 0.60
exon number 3
gene id AMCG00001314
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 24568365 ~ 24576371 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGAAGTCTAAAAACTTTCGGATCGATGCCCTCCTGGCGGACGAGGCTCCCAGAGCAGCTCCCGGCGCCTCCTCCCCGGGGTTGAGTTTAGACAGTCCTGGCAGTAGCCCCATCTCCTGCCTCAGGACGGAGACCCCCTCGCCCCGTGCAACACCTGGAGCAATGCAGCTTCAAACGGGGATTATCCCTAAACCGGGTCTTCTCCACCTGCCGCACCCAGGACTGGCTTCATTGCCGCAGGGAGCGATCCCCGGCATGTACCCCGCGCCCATGTACCCGATCTCCGCATTGGGAAGCCAGCATCCAGCATTTACCTATGCGGGCTTCTCGCACCTGACGCAGCCGTACCCGGAGCACCTGAAGGTGGCTGCGGCAGCGGGGTCCTTCCCACTGGAGCACTGGATCCGGGCCGGCATCATGGTACCTCGGCTACCGGACTACAACACTGCCCCGCAATCTGGCCTGATGGGGAAATGTAGACGACCTCGGACAGCGTTTACCAGCCAGCAGCTACTGGAGTTGGAGAACCAGTTCAAACTCAACAAGTACCTGTCCCGGCCGAAGCGCTTTGAGGTGGCCACCTCGCTGATGCTGACAGAGACCCAGGTGGACAAACCCGGGGAGAGCCGTGGGTCCCTGGGGGAAAGAggagtggaggaggaagaggaggaggaagaggaggaggaagaagaagaggcaGCTCACAGGGAATTCAGCAGCAGCTTGGGCCATCCCACAGACTACCTACAACACACCACAGACCTAAACTACAGCCCCCACAGCTCATATTCTGAAGATGAGCTGGGAGAAGGGGCCAATGACAGGAAAATTGGGGCTGGTTTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163703 lncRNA upstream 131348 24424565 ~ 24437017 (+) True AMCG00001312
TU163619 lncRNA upstream 447904 24052822 ~ 24120461 (+) True G130552
TU163590 lncRNA upstream 642354 23924878 ~ 23926011 (+) True G130530
TU163591 lncRNA upstream 644488 23923211 ~ 23923877 (+) True G130531
TU163544 lncRNA upstream 712249 23855720 ~ 23856116 (+) True G130492
TU163746 lncRNA downstream 174748 24751119 ~ 24751414 (+) True G130648
TU163787 lncRNA downstream 446308 25022679 ~ 25023049 (+) True G130684
TU163792 lncRNA downstream 480250 25056621 ~ 25056978 (+) True G130689
TU163795 lncRNA downstream 510290 25086661 ~ 25086898 (+) True G130692
TU163798 lncRNA downstream 547223 25123594 ~ 25126079 (+) True G130695
AMCG00001310 mRNA upstream 65990 24496658 ~ 24502375 (+) True AMCG00001310
AMCG00001311 mRNA upstream 77729 24480969 ~ 24490636 (+) True AMCG00001311
AMCG00001313 mRNA upstream 113236 24447621 ~ 24455129 (+) True AMCG00001313
AMCG00001312 mRNA upstream 122132 24436490 ~ 24446233 (+) False AMCG00001312
AMCG00001302 mRNA upstream 216718 24322671 ~ 24351647 (+) True AMCG00001302
AMCG00001315 mRNA downstream 10967 24587338 ~ 24606472 (+) True AMCG00001315
AMCG00001317 mRNA downstream 69481 24645852 ~ 24659929 (+) True AMCG00001317
AMCG00001319 mRNA downstream 126272 24702643 ~ 24861705 (+) True AMCG00001319
AMCG00001322 mRNA downstream 453532 25029903 ~ 25044812 (+) True AMCG00001322
AMCG00001324 mRNA downstream 543265 25119636 ~ 25146056 (+) True AMCG00001324
TU163702 other upstream 113980 24433793 ~ 24454385 (+) True G130616
TU163362 other upstream 1401709 23166263 ~ 23166656 (+) True G130335
TU162879 other upstream 3291486 21271384 ~ 21276879 (+) True G129913
TU162840 other upstream 3489495 21077135 ~ 21078870 (+) True G129877
TU162800 other upstream 3625968 20942072 ~ 20942397 (+) True G129843
TU163730 other downstream 7808 24584179 ~ 24591475 (+) False AMCG00001315
TU164194 other downstream 2280228 26856599 ~ 26863132 (+) False AMCG00001361
TU164234 other downstream 2375537 26951908 ~ 26954597 (+) True AMCG00001365

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000299_02723315_02728716.mRNA True 1098 mRNA 0.55 3 CI01000299 2723220 ~ 2728753 (-)