RNA id: AMCG00001315


Basic Information

Item Value
RNA id AMCG00001315
length 2514
RNA type mRNA
GC content 0.55
exon number 16
gene id AMCG00001315
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 24584179 ~ 24606472 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTGGCTGAAATTCCCAGATGCCCTTTGACCTCTGGTCATTTGCAGAAGATGAGCTGCACCAAACATGAGAAGGTAGCTGTGCCCAGGCAGGCTGGAAGCAGGAGGACGCGTCCACAAAAGAGCTGCTACTTTGGAGTGGAGGTGTCAGAGGAGCTGGTGTGGGACACCTGGGAGCTGGGCAGGGAGATCACCAAGACCCTGCAACTCAAGAACgttcacattaaaatgcaaaagcttCGATTCAAGTCTCCCTCTTCGAAATTCTTCACCACTTTGTTTCCTCAAACCATTGTGCTAAGCCCTGGTACTTCGTTCTCACTGCCTGTGACATTCCGCTCCTTAGAAAAGCGCGAGAACTCCGATGCCATTGAGTTTGAGTGCAAAGAGGGGGTGTTTCGCGTGCTGCTCCGTGCCACACTCCCTCGCCACATGCTCGAGATGCCTGAGTCTGTGCTTGTGCCAGCCTGTGCTGCTTTTGATAGCTCTCGGGTCATCTTCTTCTTCCGCAATGCCAGTAAGCTTGTGACATCATTCTCCTGGGTTGTGCCCGAGCCTTTCCAGTTCACCCCAATGTCGGGGCAGGAGGACACACAGAGCGTGCTAGACTTTGGTGCTGTGGCTGTGGGGGATGCCGTGGAAAAGCACTTTGAGATTCACAACCTGTCATCTGTGAGAGCTCCATTTCGAGTTGCCCAGGCCGCCCGCCCCTCACTGCTGGAGGATGTGTTCTTCTGTGAGGCCCAGCAGGGCAGCGTGCCAGGGGTCAGCACACTGACGCTCCCAGTGCGCTTTAGCCCTAAGACTGTGGGCAGCACCAGTGTGGATTACTTCTACATCACCTCTGCAGGCAATGTCTGCAAGGCTGTTGTGAAGGTGACCGGATCCTGCAAAGGTCCTCTGGTTTCCTTATCCAGCTCTGTTGTGGATTTCGGCCTTGTAGAGCTGGGGGAGTTTGCAGTACGCACACTGCAAATTGTCAACACCTCGGACGTACCTGCACATTACCAGTTTAGTATCGACTGCAGCTACAGTGTCTTCTCCGTTGACAAGCCCTGGGGTGTGCTTGCTGGGGAGAGCTCCCTCACCCTGCGCCTCTGCTTTCAGCCCAGCCATCCCATCAGCCACTACAGGAGAGTGGCCTGCTTCATCCACCACCAAAAGCCCATTTTCCTGGACCTGATAGGCACCTGTCACTCAGAGCAGCTGAAACCGGCAATTCTAAAGCCCAAACATCTGCGTCTCTATAGCatcagagagaggagggggctGACCATCTACCCCCCAGACATCCTGAGTGCCATGGTGGCCGAGAAAAAACTCCTGTTGGATGAGAATGGGGCGCTGTTCCTCCCATTGCAGGAATCTGACGGGGACCCTGCTGAGCCTCCCCCTGTGTCTGACCCTGTGGGAGAAGACCTCAAGGAGGGCTGGGGTGATGACGTCCTGAGGTTCCGTCACGTGACCCTTGACCCCCCGGAGATCCTCTTCCACAACGGCCCATGCTCCCGCCCCCTCTCCTTGACCAACCACACCAAGGGAAGGCTGACGATCATCTGGACCAGTCTTGTGGGGAGCCCCTTCAGTGTGACCCCCCTGACCTGTGACCTCCCTCCTCTGAAGACCTCTGCCTTCAGGATCAACTACAGCCCTGGCCAGGACAACACTTTCCACGGTGCCGAGCTGGAGTGCTTCGCCTTCTATACGGTAGAATTCTATTACTTCAGGGTTGTGAAGGACCAGCAGTACATGGAGGACAGCACCATGTGTCCGCCCTGGTGTGGGACCTTGAGAGTCAGCGGTCACTCATTTCAGCCTGGCCACCAGCACTTCATCCCACGCTACACCCTGCAGCAGCCCACACTGGTATTCCCTACCCTGAACCAGCAAGCCTGTAAGTCCATTCTGTTCCAGAATAATGGAGAGCTACCCATCACCTTCAGCCTGGACCCAAATAACTTGTCTGTGGTCAAGCTGCATCCCACCAGTGGGTTGGTACAGCCTGGAACTCACCAGATCTTCACTCTGAGGAAAACTCCTGCAGAAGAGAATGGCCAAAAACACATCCTGTCTTTGCAGCTGAACGCCTCCCAGAATCACATCCAGGAAATCACTGTGATCAGTGTGGCCGAGAAGCCCAGAATTTCCTTGGAGGGAGACGGCACTCTGTTCTTCAAGCCCACTGCTGTTGGCTTATCTTCTGAACGCTCTTACCTCATAAAGAATGTCAGTTGCGTGCCTCTGACTTTTGAATGGAGGATATGGAGTCCGGATTCTCAAGTGCTGTCTGTCTCGCCCAAGGAGGGCATCCTTCAACCCAACGAATCCTTGGCTGAGAGCCCTGTTGTGGACCTGGGGCCTGTGCTAGTTGGCAGCTGTCAGATGTGTGACCTGGTGCTGCTAAACCACGGTTCCTATCCTCTCAGGTTCTCCCTTACAATAGAGCAAGGTTTCACTGGGCCATGCCTGCCTGAGGAACTCCAAAATGACCCCATTGGTACagcaaacttttaa

Function

GO: NA

KEGG:

id description
K24226 CFAP65; cilia- and flagella-associated protein 65

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163703 lncRNA upstream 150321 24424565 ~ 24437017 (+) True AMCG00001312
TU163619 lncRNA upstream 466877 24052822 ~ 24120461 (+) True G130552
TU163590 lncRNA upstream 661327 23924878 ~ 23926011 (+) True G130530
TU163591 lncRNA upstream 663461 23923211 ~ 23923877 (+) True G130531
TU163544 lncRNA upstream 731222 23855720 ~ 23856116 (+) True G130492
TU163746 lncRNA downstream 144647 24751119 ~ 24751414 (+) True G130648
TU163787 lncRNA downstream 416207 25022679 ~ 25023049 (+) True G130684
TU163792 lncRNA downstream 450149 25056621 ~ 25056978 (+) True G130689
TU163795 lncRNA downstream 480189 25086661 ~ 25086898 (+) True G130692
TU163798 lncRNA downstream 517122 25123594 ~ 25126079 (+) True G130695
AMCG00001314 mRNA upstream 10967 24568365 ~ 24576371 (+) True AMCG00001314
AMCG00001310 mRNA upstream 84963 24496658 ~ 24502375 (+) True AMCG00001310
AMCG00001311 mRNA upstream 96702 24480969 ~ 24490636 (+) True AMCG00001311
AMCG00001313 mRNA upstream 132209 24447621 ~ 24455129 (+) True AMCG00001313
AMCG00001312 mRNA upstream 141105 24436490 ~ 24446233 (+) False AMCG00001312
AMCG00001317 mRNA downstream 39380 24645852 ~ 24659929 (+) True AMCG00001317
AMCG00001319 mRNA downstream 96171 24702643 ~ 24861705 (+) True AMCG00001319
AMCG00001322 mRNA downstream 423431 25029903 ~ 25044812 (+) True AMCG00001322
AMCG00001324 mRNA downstream 513164 25119636 ~ 25146056 (+) True AMCG00001324
AMCG00001329 mRNA downstream 543825 25150297 ~ 25150756 (+) True AMCG00001329
TU163702 other upstream 132953 24433793 ~ 24454385 (+) True G130616
TU163362 other upstream 1420682 23166263 ~ 23166656 (+) True G130335
TU162879 other upstream 3310459 21271384 ~ 21276879 (+) True G129913
TU162840 other upstream 3508468 21077135 ~ 21078870 (+) True G129877
TU162800 other upstream 3644941 20942072 ~ 20942397 (+) True G129843
TU164194 other downstream 2250127 26856599 ~ 26863132 (+) False AMCG00001361
TU164234 other downstream 2345436 26951908 ~ 26954597 (+) True AMCG00001365

Expression Profile