RNA id: TU163730



Basic Information


Item Value
RNA id TU163730
length 704
RNA type TUCP
GC content 0.51
exon number 6
gene id AMCG00001315
representative False

Chromosome Information


Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 24584179 ~ 24606472 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AGCTATTCTAGGCTTGCACTGAGTGGATTGCTGTTTGGACAATATAACTGTGTTGTGATTTTTAGTTTCTATTTTCCAAAATAGTGTTCACTCTGAAGAAGAGCTGCAATGTTGGCTGAAATTCCCAGATGCCCTTTGACCTCTGGTCATTTGCAGAAGATGAGCTGCACCAAACATGAGAAGGTAGCTGTGCCCAGGCAGGCTGGAAGCAGGAGGACGCGTCCACAAAAGAGCTGCTACTTTGGAGTGGAGGTGTCAGAGGAGCTGGTGTGGGACACCTGGGAGCTGGGCAGGGAGATCACCAAGACCCTGCAACTCAAGAACgttcacattaaaatgcaaaagcttCGATTCAAGTCTCCCTCTTCGAAATTCTTCACCACTTTGTTTCCTCAAACCATTGTGCTAAGCCCTGGTACTTCGTTCTCACTGCCTGTGACATTCCGCTCCTTAGAAAAGCGCGAGAACTCCGATGCCATTGAGTTTGAGTGCAAAGAGGGGGTGTTTCGCGTGCTGCTCCGTGCCACACTCCCTCGCCACATGCTCGAGATGCCTGAGTCTGTGCTTGTGCCAGCCTGTGCTGCTTTTGATAGCTCTCGGGTCATCTTCTTCTTCCGCAATGCCAGTAAGCTTGTGACATCATTCTCCTGGGTTGTGCCCGAGCCTTTCCAGTTCACCCCAGTCAGCGGCACCCTGGAGCCGGN

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU163703 lncRNA upstream 147162 24424565 ~ 24437017 (+) True AMCG00001312
TU163619 lncRNA upstream 463718 24052822 ~ 24120461 (+) True G130552
TU163590 lncRNA upstream 658168 23924878 ~ 23926011 (+) True G130530
TU163591 lncRNA upstream 660302 23923211 ~ 23923877 (+) True G130531
TU163544 lncRNA upstream 728063 23855720 ~ 23856116 (+) True G130492
TU163746 lncRNA downstream 159644 24751119 ~ 24751414 (+) True G130648
TU163787 lncRNA downstream 431204 25022679 ~ 25023049 (+) True G130684
TU163792 lncRNA downstream 465146 25056621 ~ 25056978 (+) True G130689
TU163795 lncRNA downstream 495186 25086661 ~ 25086898 (+) True G130692
TU163798 lncRNA downstream 532119 25123594 ~ 25126079 (+) True G130695
AMCG00001314 mRNA upstream 7808 24568365 ~ 24576371 (+) True AMCG00001314
AMCG00001310 mRNA upstream 81804 24496658 ~ 24502375 (+) True AMCG00001310
AMCG00001311 mRNA upstream 93543 24480969 ~ 24490636 (+) True AMCG00001311
AMCG00001313 mRNA upstream 129050 24447621 ~ 24455129 (+) True AMCG00001313
AMCG00001312 mRNA upstream 137946 24436490 ~ 24446233 (+) False AMCG00001312
AMCG00001317 mRNA downstream 54377 24645852 ~ 24659929 (+) True AMCG00001317
AMCG00001319 mRNA downstream 111168 24702643 ~ 24861705 (+) True AMCG00001319
AMCG00001322 mRNA downstream 438428 25029903 ~ 25044812 (+) True AMCG00001322
AMCG00001324 mRNA downstream 528161 25119636 ~ 25146056 (+) True AMCG00001324
AMCG00001329 mRNA downstream 558822 25150297 ~ 25150756 (+) True AMCG00001329
TU163702 other upstream 129794 24433793 ~ 24454385 (+) True G130616
TU163362 other upstream 1417523 23166263 ~ 23166656 (+) True G130335
TU162879 other upstream 3307300 21271384 ~ 21276879 (+) True G129913
TU162840 other upstream 3505309 21077135 ~ 21078870 (+) True G129877
TU162800 other upstream 3641782 20942072 ~ 20942397 (+) True G129843
TU164194 other downstream 2265124 26856599 ~ 26863132 (+) False AMCG00001361
TU164234 other downstream 2360433 26951908 ~ 26954597 (+) True AMCG00001365

Expression Profile