RNA id: AMCG00001317



Basic Information


Item Value
RNA id AMCG00001317
length 426
RNA type mRNA
GC content 0.57
exon number 3
gene id AMCG00001317
representative True

Chromosome Information


Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 24645852 ~ 24659929 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGCCCGCTATGAGTTTTATTGGAGTCCAAGGCAGGTGATAGCAGGGGCTCAGAGCCTGTGCCAGGTGAATGCACAAGGCGTGTACCCCATGCTCACTGTTAGCGATGCGCGCAGCTCCGGCAGTATTGAGGGCATCAGCAAACTGCAGCTCTGGAGTCTCTTCTCCCTGGAGACCCTCAACTCCTACCTGCAGAGAGACCCCACTCCCACAGAGCTCATCTACAGAGTGCCCACCCGACACAGagatgaggaagaggaagaggaagaagaggaggggCCCTGGAAGTGGACTACCTTGGGCTGCGTAGAGGGCTTGGTGTCTCTGTCCATCACAGTGAACTCATTcttctgtctctccttctccagctcccACTGCTGCAGTTCTGATCTGTACTGTGTCAGGGCGCCTCCTGTGGTCACCTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU163703 lncRNA upstream 208835 24424565 ~ 24437017 (+) True AMCG00001312
TU163619 lncRNA upstream 525391 24052822 ~ 24120461 (+) True G130552
TU163590 lncRNA upstream 719841 23924878 ~ 23926011 (+) True G130530
TU163591 lncRNA upstream 721975 23923211 ~ 23923877 (+) True G130531
TU163544 lncRNA upstream 789736 23855720 ~ 23856116 (+) True G130492
TU163746 lncRNA downstream 91190 24751119 ~ 24751414 (+) True G130648
TU163787 lncRNA downstream 362750 25022679 ~ 25023049 (+) True G130684
TU163792 lncRNA downstream 396692 25056621 ~ 25056978 (+) True G130689
TU163795 lncRNA downstream 426732 25086661 ~ 25086898 (+) True G130692
TU163798 lncRNA downstream 463665 25123594 ~ 25126079 (+) True G130695
AMCG00001315 mRNA upstream 39380 24587338 ~ 24606472 (+) True AMCG00001315
AMCG00001314 mRNA upstream 69481 24568365 ~ 24576371 (+) True AMCG00001314
AMCG00001310 mRNA upstream 143477 24496658 ~ 24502375 (+) True AMCG00001310
AMCG00001311 mRNA upstream 155216 24480969 ~ 24490636 (+) True AMCG00001311
AMCG00001313 mRNA upstream 190723 24447621 ~ 24455129 (+) True AMCG00001313
AMCG00001319 mRNA downstream 42714 24702643 ~ 24861705 (+) True AMCG00001319
AMCG00001322 mRNA downstream 369974 25029903 ~ 25044812 (+) True AMCG00001322
AMCG00001324 mRNA downstream 459707 25119636 ~ 25146056 (+) True AMCG00001324
AMCG00001329 mRNA downstream 490368 25150297 ~ 25150756 (+) True AMCG00001329
AMCG00001330 mRNA downstream 490835 25150764 ~ 25164833 (+) True AMCG00001330
TU163730 other upstream 54377 24584179 ~ 24591475 (+) False AMCG00001315
TU163702 other upstream 191467 24433793 ~ 24454385 (+) True G130616
TU163362 other upstream 1479196 23166263 ~ 23166656 (+) True G130335
TU162879 other upstream 3368973 21271384 ~ 21276879 (+) True G129913
TU162840 other upstream 3566982 21077135 ~ 21078870 (+) True G129877
TU164194 other downstream 2196670 26856599 ~ 26863132 (+) False AMCG00001361
TU164234 other downstream 2291979 26951908 ~ 26954597 (+) True AMCG00001365

Expression Profile