RNA id: AMCG00001322



Basic Information


Item Value
RNA id AMCG00001322
length 924
RNA type mRNA
GC content 0.44
exon number 4
gene id AMCG00001322
representative True

Chromosome Information


Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 25029903 ~ 25044812 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGCATCGAAACTTCCAGCAAAAAATCCCAAAATATACTTTGGTCATTACCAACCTGAATGGGAGACTGACCAGGAGTTCCAGAAGATGATCACTAGTTCAGAAGAAGGAAGAGAATTCGCTTATTGTAAAGCATGTAGGAAGTTTGTGAAAGTTTCAGCATCTGGCCGATTCTACGTTGTGAGACATTTTCAAACGGAAACACACAAGCGTGCAGTTCAAAAATCGAAGCAGCATATACCCATCGATCAGCAATTTCGACAGCAAAACAAGAATACGAATTTTGACCGATGTGTGACAGAGGCCGAGTTACTTTTTTGCAAGTCTTTGGTGGATCATAATTTGCCATCGACCACCGCTGACCATTTCACTGATTTAGTCAGGGAAATGTTTCCTGACTCGAAATCTGCCACTGCCTTCGCCTGCAAACGAACCAAGGCCACCCAGATTGTCAAAAGGTGCCTCTTGACAGAGCTAACAACTCCTATTCTTGAAAGCTGTAGAAATGGACCATTTTCGTTACTCATCGATTCAACTAACGACAAGAATTATGATAAACACCTGGAGTCAGGAACAAACACCAAGATCCTTGACCTTCCAGTGCTTTCTGGAGGGACAGCAGAGGATGTGTTTGCTGCAGTTGCCACAGTGATTGATGGGCAGAATATTCCCTGGAAGAACATGGTCGGATTTACTAGTGACAACTGCAACGTGATGATGGGACAGCACAACTCCGTCCTGTCACGTCTGCGAGAGAAGAACCCGGATATTTTCACCCTTGGCTGCAACCTCTGCGCTAAAGCTGCCATCAAGGTGATGTCTGTTCCAGTGGATGACATCTTGATTGACATCTACTGCTTCTTTGAGCACAGTGTGAAGGACTATGTGCAACATTATACGAAACATTACGATGGAGACAGGTag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU163787 lncRNA upstream 6854 25022679 ~ 25023049 (+) True G130684
TU163746 lncRNA upstream 278489 24751119 ~ 24751414 (+) True G130648
TU163703 lncRNA upstream 592886 24424565 ~ 24437017 (+) True AMCG00001312
TU163619 lncRNA upstream 909442 24052822 ~ 24120461 (+) True G130552
TU163590 lncRNA upstream 1103892 23924878 ~ 23926011 (+) True G130530
TU163792 lncRNA downstream 11809 25056621 ~ 25056978 (+) True G130689
TU163795 lncRNA downstream 41849 25086661 ~ 25086898 (+) True G130692
TU163798 lncRNA downstream 78782 25123594 ~ 25126079 (+) True G130695
TU163808 lncRNA downstream 151570 25196382 ~ 25196991 (+) True G130705
TU163814 lncRNA downstream 170413 25215225 ~ 25215735 (+) True G130711
AMCG00001319 mRNA upstream 168198 24702643 ~ 24861705 (+) True AMCG00001319
AMCG00001317 mRNA upstream 369974 24645852 ~ 24659929 (+) True AMCG00001317
AMCG00001315 mRNA upstream 423431 24587338 ~ 24606472 (+) True AMCG00001315
AMCG00001314 mRNA upstream 453532 24568365 ~ 24576371 (+) True AMCG00001314
AMCG00001310 mRNA upstream 527528 24496658 ~ 24502375 (+) True AMCG00001310
AMCG00001324 mRNA downstream 74824 25119636 ~ 25146056 (+) True AMCG00001324
AMCG00001329 mRNA downstream 105485 25150297 ~ 25150756 (+) True AMCG00001329
AMCG00001330 mRNA downstream 105952 25150764 ~ 25164833 (+) True AMCG00001330
AMCG00001325 mRNA downstream 201564 25246376 ~ 25296858 (+) True AMCG00001325
AMCG00001328 mRNA downstream 254284 25299096 ~ 25302688 (+) True AMCG00001328
TU163730 other upstream 438428 24584179 ~ 24591475 (+) False AMCG00001315
TU163702 other upstream 575518 24433793 ~ 24454385 (+) True G130616
TU163362 other upstream 1863247 23166263 ~ 23166656 (+) True G130335
TU162879 other upstream 3753024 21271384 ~ 21276879 (+) True G129913
TU162840 other upstream 3951033 21077135 ~ 21078870 (+) True G129877
TU164194 other downstream 1811787 26856599 ~ 26863132 (+) False AMCG00001361
TU164234 other downstream 1907096 26951908 ~ 26954597 (+) True AMCG00001365

Expression Profile