RNA id: AMCG00001324



Basic Information


Item Value
RNA id AMCG00001324
length 801
RNA type mRNA
GC content 0.62
exon number 5
gene id AMCG00001324
representative True

Chromosome Information


Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 25119636 ~ 25146056 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCCCAGCAACCCGGCCAGCTCAGCCCTGCTCTTCCACCTCCACTCATCCCAGTCCACCAGCAACACAGTTGGCTTCCTCGGTTCCACTACGTCCTCCGCAGCCCCCTCCCAGCAGGTGCTCGAGCAACAGAACATCCGCTCTGGTCATCCCGAACCATGGAGGGGAACCCGAGGTGGAGAGTGGAACACTCCCCCCAAGAAGACACAGCTGGCGAGGTACGATGGGTCTGTGGCCTGGGAAACGTACCTGGCCCAGTTTCTGGTAGTTGCCTGGGCCAACAGTTGGGGACCTGAGCAGCGGGCGGAAGAGCTAGCCACAGCACTCGAAGGGAAGGTGCTCCAGGCACCACAGAAATGGCTTGACTTCAAAGAGCTGTCGGCGGCCCTTGAAAGACGTTTCGGGGGAGGCCTGGGAGCCTTCGCTGCTGACATCGGTTTCCTGGCGAGGGGGGGCTCCTCCGATTTCCCCACGGCAGTGCAGGAGGAACTGGCGCTGCAAGCTTTCACCAGGGGGCTGACACCCAACACTCTGCAGCACCAGGTCCTGATCGTCAGACCACGTATCCTAGACACAGCGCTGGCTTCTGCCCGGCACATGGACACGGCAAACATCAAGGACCCGTGCATTCTGGGGTTGGACTTTCTCATGCGGGTGGGGGCATCCCTGGAACTCCAGGCGGCGGAGCTACGAGTGGACCACACCTGTCTACAGCTCGAGACCACCAGCAACAGGGAGGGGAAGGTGCGCCATTGTCACAGCAACACCAGCCAGGCAGACGACCGGGGAGGCAGACAGTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU163795 lncRNA upstream 32738 25086661 ~ 25086898 (+) True G130692
TU163792 lncRNA upstream 62658 25056621 ~ 25056978 (+) True G130689
TU163787 lncRNA upstream 96587 25022679 ~ 25023049 (+) True G130684
TU163746 lncRNA upstream 368222 24751119 ~ 24751414 (+) True G130648
TU163703 lncRNA upstream 682619 24424565 ~ 24437017 (+) True AMCG00001312
TU163808 lncRNA downstream 50326 25196382 ~ 25196991 (+) True G130705
TU163814 lncRNA downstream 69169 25215225 ~ 25215735 (+) True G130711
TU163815 lncRNA downstream 69882 25215938 ~ 25217050 (+) True G130712
TU163820 lncRNA downstream 75560 25221616 ~ 25246154 (+) True G130715
TU163875 lncRNA downstream 236123 25382179 ~ 25397634 (+) True G130757
AMCG00001322 mRNA upstream 74824 25029903 ~ 25044812 (+) True AMCG00001322
AMCG00001319 mRNA upstream 257931 24702643 ~ 24861705 (+) True AMCG00001319
AMCG00001317 mRNA upstream 459707 24645852 ~ 24659929 (+) True AMCG00001317
AMCG00001315 mRNA upstream 513164 24587338 ~ 24606472 (+) True AMCG00001315
AMCG00001314 mRNA upstream 543265 24568365 ~ 24576371 (+) True AMCG00001314
AMCG00001329 mRNA downstream 4241 25150297 ~ 25150756 (+) True AMCG00001329
AMCG00001330 mRNA downstream 4708 25150764 ~ 25164833 (+) True AMCG00001330
AMCG00001325 mRNA downstream 100320 25246376 ~ 25296858 (+) True AMCG00001325
AMCG00001328 mRNA downstream 153040 25299096 ~ 25302688 (+) True AMCG00001328
AMCG00001332 mRNA downstream 217837 25363893 ~ 25365296 (+) True AMCG00001332
TU163730 other upstream 528161 24584179 ~ 24591475 (+) False AMCG00001315
TU163702 other upstream 665251 24433793 ~ 24454385 (+) True G130616
TU163362 other upstream 1952980 23166263 ~ 23166656 (+) True G130335
TU162879 other upstream 3842757 21271384 ~ 21276879 (+) True G129913
TU162840 other upstream 4040766 21077135 ~ 21078870 (+) True G129877
TU164194 other downstream 1710543 26856599 ~ 26863132 (+) False AMCG00001361
TU164234 other downstream 1805852 26951908 ~ 26954597 (+) True AMCG00001365

Expression Profile