RNA id: AMCG00001332



Basic Information


Item Value
RNA id AMCG00001332
length 993
RNA type mRNA
GC content 0.60
exon number 2
gene id AMCG00001332
representative True

Chromosome Information


Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 25363893 ~ 25365296 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGAATTCGGGTGGGGGGCAGTTGGCACACGGCTGGTGGGGTCCCTGGAGGAGGCGTTGGCTCACCTGGAACATATGAGGGGTGAGGCCGACTTCCCAGGCATCGGCCAGGGCTTTGGGAATTGCCTGACCCTCATGGACTTCCTAGGGGGCACCGAGCATGACGTGGACCTGGTCCTTAGTGGGGGCCGGCTAGAAGGGGTCTTCGTGTCAGACAACGGCCCCACTCGAGTCCCAGGCTTCACTGAGACGGCAGCTCAGATGCCCACAGGCCTCTCCCAGGAACAGGAGGCTCGGTTAGTGGCAGCAGCCCATTCCTGCTGCTTGGGCTGCGGGCTTCGGGATGGTGTCTTCAATGTGGAGCTCAAGCTGACCCCCACAGGGCCCAAGCTGATTGAGATCAACGCACGGATGGGGGGATACTACCTGCGCGACTGGGTGAGGGAAGTGTTTGGAGAGGACCTGCTGCTCTGTGCCTTCCTGTGTGCCCTAGGAATCCGCCCCTGCCTTGCCCGGCCCAGGCCCCCCACCCTGTGCCACCTCACGGGAGTCATGGGCCTGCTCTCCCAGCATAAGCAGCAGATCATGAATATGGGTATGGGGCGGCTCAGAGAGCTGCACCAAAGGGGTGTGATTAGGCTCTGTGAGTTTGNNNNNNNNNNTGgatgggagggggaggggctaaGATGGCAGGAGGAggtgaaagagaaggagaagatgagggaggggcaggggctccagcagcagcaagaGCAACAGAAAGGGGAGGGGCTCCAGCAGAGGCAGAGAGGGGATGANNNNNNNNNNGAAGGGATAGGGCTGCAGCAGGAAGGGGTCATACTGCGGGGCCTGTATGAGGAGCCATTCTGCAGTATAGGGGTCAAGGCGGAAGGAGGGGTGGAGTCCAGGCTGGGGCTCCTCACTGTNNNNNNNNNNCTGGGTCTGGATACCTCCGAGTACCCTGTCACACACTTCCTGTCCCACTTCCACTGA

Function


GO: NA

KEGG:

id description
ko04110 Cell cycle

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU163820 lncRNA upstream 117739 25221616 ~ 25246154 (+) True G130715
TU163815 lncRNA upstream 146843 25215938 ~ 25217050 (+) True G130712
TU163814 lncRNA upstream 148158 25215225 ~ 25215735 (+) True G130711
TU163808 lncRNA upstream 166902 25196382 ~ 25196991 (+) True G130705
TU163798 lncRNA upstream 237814 25123594 ~ 25126079 (+) True G130695
TU163875 lncRNA downstream 16883 25382179 ~ 25397634 (+) True G130757
TU163895 lncRNA downstream 84521 25449817 ~ 25450306 (+) False AMCG00001331
TU163896 lncRNA downstream 85220 25450516 ~ 25450858 (+) True G130773
TU163913 lncRNA downstream 217046 25582342 ~ 25582606 (+) True G130789
TU163916 lncRNA downstream 267938 25633234 ~ 25633576 (+) True G130792
AMCG00001328 mRNA upstream 61205 25299096 ~ 25302688 (+) True AMCG00001328
AMCG00001325 mRNA upstream 67035 25246376 ~ 25296858 (+) True AMCG00001325
AMCG00001330 mRNA upstream 199060 25150764 ~ 25164833 (+) True AMCG00001330
AMCG00001329 mRNA upstream 213137 25150297 ~ 25150756 (+) True AMCG00001329
AMCG00001324 mRNA upstream 217837 25119636 ~ 25146056 (+) True AMCG00001324
AMCG00001331 mRNA downstream 58391 25423687 ~ 25450310 (+) True AMCG00001331
AMCG00001334 mRNA downstream 187148 25552444 ~ 25581376 (+) True AMCG00001334
AMCG00001335 mRNA downstream 264751 25630047 ~ 25636339 (+) True AMCG00001335
AMCG00001333 mRNA downstream 298569 25663865 ~ 25673767 (+) True AMCG00001333
AMCG00001338 mRNA downstream 353608 25718904 ~ 25725679 (+) True AMCG00001338
TU163730 other upstream 772418 24584179 ~ 24591475 (+) False AMCG00001315
TU163702 other upstream 909508 24433793 ~ 24454385 (+) True G130616
TU163362 other upstream 2197237 23166263 ~ 23166656 (+) True G130335
TU162879 other upstream 4087014 21271384 ~ 21276879 (+) True G129913
TU162840 other upstream 4285023 21077135 ~ 21078870 (+) True G129877
TU164194 other downstream 1491303 26856599 ~ 26863132 (+) False AMCG00001361
TU164234 other downstream 1586612 26951908 ~ 26954597 (+) True AMCG00001365

Expression Profile