RNA id: AMCG00001355


Basic Information

Item Value
RNA id AMCG00001355
length 2329
RNA type mRNA
GC content 0.39
exon number 4
gene id AMCG00001355
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 26445081 ~ 26453330 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tatatatatatatatatataaatcctatCTAAAATAACTGCAATCTAGAAATAAACCCCTGCTTTTAAAAGGAGGGGTATCGTCATCACTGTCTGTTCGCTGCTGCTGTCAGTGCCTACTGAAATGCAGCTCTGTGGAGAATTTCGGTTTCCTGCCACAAGAAGGCTTTAAGGGTGAAGGACCTAGTTTATACATCAGTTCAGCAGTGCACAGCAGAAATGAAGCTTTATTCTCTCAGAGCGACCTGGCTGGCTATTGCCATTTGTTGTGCCTCAATAGGACTAGGCTGTCCAGCTCCTACTTTCCAGTTTTTGTCGGCTGCACTCAATGGCAGTGTCACGCTGGAGTGCAATTTCACGTCATCTATCCAGATGGACAGTGAAATAATTGTTACTCTTTCTGACCAAGCACAGAACGTGAAATGCAAATTGATATTAAAGACAAACGAGTCGTCCAAGTTCAGTGAAAACCATGATGGATGCCTTGTGAATCGCTCTGACAACAAAGTGGACTTTACACTGTTGTGGCTAAGAAAAGAGGACAGAGGCATGTACAGGTGCAATGTGGAGATCGTCTTCCCTCCACCCTACCAGAGGTTGAATGGAAGTGCCACGACAATGCTCATTGTGGAAGagaATGAATGCAAACAAGATTACCATTCAGATTCCTCCATGACCTGGCTGTCGGTGGTAACAGGCTGTGCTCTTCTCATGTACAGCACAGTGATGACCGTGATAGTGGCTATTTACTGTatcaaattcacaaaagaaaagaacacacaGAATGATTACATGAACATGAAACCCAGAGGACTGAAGAAGAATCAAGGTGTGATCCACCCCACCAGAAACGGCAGATACTGAGAAAAAACTTTTAAAGCTGGCTTATCTCAAACGGATCTTTAGTAGGTCACCTAAACTCTAATATAAGCAGGAAGGAAAATGTATGTGGTCTAATGTAAAAAACTGTTCTTAGTCACATCCCGCCACTATATacaatactgttttaaaatgcacctAGGAGCACCAAGCAGGTTAAGAAGATCTTCTGATTTTTCAGGATGAAAGACAAGGGTTTCACTCCTGCTTGGGTATCTATACTTACTGCTTTGCCATCTGATCATATTAAGTTCCTACTTTATTATAAGAACCTATCAGAAAGACAACAAAGTTGTCTTAGTTGCCAAGTCAATTGTAGCCACTTTTCTTTAATCTCTAATTATAAGATGTTTCCTTTTGTTGCATTCTTTCAAGCAAAAACACAGTTAGGTGGATCcctacatttttgtatttgccaaACAGtacagaaaggaaaatgtgttcagttttaaaatctgtatttaattattatattttggacAGATTGTTCAAACTGCTGGAGACTTGGGAGACTAGggactggattaaatcaaaactttgacccacccactaatagcaaactacaaagctgtacatctaagtagttacatttctgattagaagaaagtggcatctaactaaaaatgaagctgcaactgagtacagatctgtagttttctattagcaggtgaatcaatgctttgatttaatccagccatAGGTTTCTAGGGGGGATACTGGTACGTTGTGTGGTGGTGTAGATAATGTAAGGatcattatttttgtcagcattatgttttcattttctgctggttgttttgttattaatgtcATTTGTCTTGTAATACTTTCCAAAAGAGTTAAAcgtgtgtaatttgtaaatgcattcattttgtattaagGACTCGTTTCAGCAATGTCCCCTagtgattttgtttgtatgtgtataacTGTAACTGTACATACTTGTATTGCTAAGACATATTGAGCATAAATACAACTATTGATATGTATGCCTACAACTCTATCGCTCCTCTATTTGGGCTGGACTCCCAGAGTGAACAGAAGCAGGTGGGTAGACAGTACTGTTCGAAAGACACATGCAAGCGGTCAATGTCTCTGATATGTTATTTGGACTCAGGGAGCACAGTTGGTGAATGGATTAACAATCGGCAGTTTTTAATTTAGCCCCGGCGGTGTTTGTGACACTCCAGTGACTTGCGCTTCTCTTCCTGAGAGGGTGAGACTTGCATGGAAAAAGGGAAATGGATATTCGTTCTTTAGGtgtaaatcaaagaaaacagtAATATATTCTGCACAAGGAAGGATTTTACAATGTAACTCTGATGTCATGGCAGCTTAACTGTCTGTAGCAAATTAACGTTTCTGCCTTCCCCCACTGTAATTATCTTTCtatgtttatcttttttaatcAGTTGCCATGACATTAAATATGTCTTACTTCTATCAGC

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU164097 lncRNA upstream 109791 26296707 ~ 26335290 (+) True G130948
TU164023 lncRNA upstream 382388 26061148 ~ 26062693 (+) True G130884
TU163974 lncRNA upstream 695580 25735555 ~ 25749501 (+) False AMCG00001337
TU163968 lncRNA upstream 715244 25727853 ~ 25729837 (+) True G130839
TU163941 lncRNA upstream 769599 25675217 ~ 25675482 (+) True G130817
TU164185 lncRNA downstream 317550 26770880 ~ 26771161 (+) True G131017
TU164189 lncRNA downstream 339941 26793271 ~ 26793553 (+) True G131021
TU164243 lncRNA downstream 525445 26978775 ~ 26980289 (+) True G131072
AMCG00001353 mRNA upstream 154233 26284460 ~ 26290848 (+) True AMCG00001353
AMCG00001347 mRNA upstream 176084 26231286 ~ 26268997 (+) True AMCG00001347
AMCG00001352 mRNA upstream 255211 26187889 ~ 26189870 (+) True AMCG00001352
AMCG00001351 mRNA upstream 304255 26122843 ~ 26140826 (+) True AMCG00001351
AMCG00001349 mRNA upstream 327603 26100278 ~ 26117478 (+) True AMCG00001349
AMCG00001356 mRNA downstream 28061 26481391 ~ 26488991 (+) True AMCG00001356
AMCG00001357 mRNA downstream 58227 26511557 ~ 26519285 (+) True AMCG00001357
AMCG00001360 mRNA downstream 84622 26537952 ~ 26545509 (+) True AMCG00001360
AMCG00001363 mRNA downstream 383157 26836487 ~ 26838265 (+) True AMCG00001363
AMCG00001361 mRNA downstream 405764 26859094 ~ 26880797 (+) True AMCG00001361
TU163730 other upstream 1853606 24584179 ~ 24591475 (+) False AMCG00001315
TU163702 other upstream 1990696 24433793 ~ 24454385 (+) True G130616
TU163362 other upstream 3278425 23166263 ~ 23166656 (+) True G130335
TU162879 other upstream 5168202 21271384 ~ 21276879 (+) True G129913
TU162840 other upstream 5366211 21077135 ~ 21078870 (+) True G129877
TU164194 other downstream 403269 26856599 ~ 26863132 (+) False AMCG00001361
TU164234 other downstream 498578 26951908 ~ 26954597 (+) True AMCG00001365

Expression Profile