RNA id: AMCG00001357



Basic Information


Item Value
RNA id AMCG00001357
length 938
RNA type mRNA
GC content 0.37
exon number 5
gene id AMCG00001357
representative True

Chromosome Information


Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 26511557 ~ 26519285 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CACAGctgcaaacaaagacaaaacaatcaGCCTAAGTTAAGTCAGACAACTTGGATCACTGAACATGCTGCCCAGACTGTTTCCTCTCTACCTCTGCCTTGCCCTTGTGAATGGTTCAGGAGCAGACTCAAATATTGCTGTTACCATGCGAGCCCAGCAGACCACAGgTCTCACAAAACATAGAAATTGGAAGATCACATCCACACACAAGTGCTCAGATTCCTCCACGCCCAAACCATAAGAAGAAAAGAAGACGGGGTGATGAAAGCAATGGCGATTATATGGACATGAGGCAAGTGCCCAAATCAAGGGATAAGAACTTTAATTCCCAGCAGATCCATTActgatattttctttgtattttttttttccaatttatatgtattaatgcTTAATACTTGTTAATAtaccatgttttgttttctatttcttaAAGATGGCTTACATATAATTACTGcttaaagcaatgttttacTTTACAATCTTTGGTATGTCATgcttgtttgtaatttgtgctAAAAGGAGCCACATTTGGAACTTTTACCTTTGTAAAGTTATTTGTATTCTACATTGGAATGTATATTTTTGCCATATTTAACATTGCTTCATTAGAAAGGGGAAATTTAATCCCCTGCCTTTGGAGAGCACTTCATCACAAAACACTTCATGGATAGATGTCCTTCAGCACAGAAGAGAAAACAGTGCCGCCTCCTGGTTCAACAATGACACTTTAGGATGCAAGCTGAGGTTTGCCAAATGTTAACCCGGCCCAGCTGGGTGCCTTGTCTTATTTCTGAGATCTGATAAGATGTGGTTTTAACAAAGTATTATTTCTCTAAGGTGTGCAagaatacaaatgtgtaaaaaaggAATGTATAAGTGCCACAAAGAAAGgtactgagttttttttttttttttttttttttttttttttttat

Function


GO: NA

KEGG:

id description
ko04612 Antigen processing and presentation
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU164097 lncRNA upstream 176267 26296707 ~ 26335290 (+) True G130948
TU164023 lncRNA upstream 448864 26061148 ~ 26062693 (+) True G130884
TU163974 lncRNA upstream 762056 25735555 ~ 25749501 (+) False AMCG00001337
TU163968 lncRNA upstream 781720 25727853 ~ 25729837 (+) True G130839
TU163941 lncRNA upstream 836075 25675217 ~ 25675482 (+) True G130817
TU164185 lncRNA downstream 251595 26770880 ~ 26771161 (+) True G131017
TU164189 lncRNA downstream 273986 26793271 ~ 26793553 (+) True G131021
TU164243 lncRNA downstream 459490 26978775 ~ 26980289 (+) True G131072
AMCG00001356 mRNA upstream 22566 26481391 ~ 26488991 (+) True AMCG00001356
AMCG00001355 mRNA upstream 58227 26445081 ~ 26453330 (+) True AMCG00001355
AMCG00001353 mRNA upstream 220709 26284460 ~ 26290848 (+) True AMCG00001353
AMCG00001347 mRNA upstream 242560 26231286 ~ 26268997 (+) True AMCG00001347
AMCG00001352 mRNA upstream 321687 26187889 ~ 26189870 (+) True AMCG00001352
AMCG00001360 mRNA downstream 18667 26537952 ~ 26545509 (+) True AMCG00001360
AMCG00001363 mRNA downstream 317202 26836487 ~ 26838265 (+) True AMCG00001363
AMCG00001361 mRNA downstream 339809 26859094 ~ 26880797 (+) True AMCG00001361
AMCG00001365 mRNA downstream 385078 26904363 ~ 26954291 (+) False AMCG00001365
AMCG00001364 mRNA downstream 485360 27004645 ~ 27042352 (+) True AMCG00001364
TU163730 other upstream 1920082 24584179 ~ 24591475 (+) False AMCG00001315
TU163702 other upstream 2057172 24433793 ~ 24454385 (+) True G130616
TU163362 other upstream 3344901 23166263 ~ 23166656 (+) True G130335
TU162879 other upstream 5234678 21271384 ~ 21276879 (+) True G129913
TU162840 other upstream 5432687 21077135 ~ 21078870 (+) True G129877
TU164194 other downstream 337314 26856599 ~ 26863132 (+) False AMCG00001361
TU164234 other downstream 432623 26951908 ~ 26954597 (+) True AMCG00001365

Expression Profile