RNA id: TU164234


Basic Information

Item Value
RNA id TU164234
length 1785
RNA type TUCP
GC content 0.40
exon number 2
gene id AMCG00001365
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 26904363 ~ 26954597 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTCGATcttttaaatgactgaattaattaaagtattatgACTTGCATAAGATcgtcatattatatatatatttgttataagCCCGCAGTCGTGTCTGTGCAGAATTTGGATCGTTCACGTGGCGCCgatgtccgcagctctgcgcgggtctgcgctgctccaccaatgggatctgcgcacttctgcagatctgcgcaaacGTGCGCTACAAAACCTCGGCAGAGTGTGCGTGTCGTGAGCGTTGAGCTCGGCAGCGCGGCGCTGGAGAAGCATCTACTTTTCTCATGTCCGCGTTTATTTCTGATGAGATGACAACACATACGTGTCTAATCTCATTACTTTGAGTGGTGTTGTACAAAAAGGCACATCAATACTTTTGGACTTTTgtcttttgcttttgtatttgcCATAGTTGTGGTTTTGTATATTAATAACAAGAATTGCTGACAGTAATCACACTGGGAAGTAGCAGCACTGGGAAGGTGGATGGGGCTCCAGTGTGATGCAGGATAAAGTGCCCACAGCCAGGCACTGGGAAAATCAGTGAGAAGCACAGGAAGGAGGAGCCAGTCCACATGGCAGAGCCAGGACCTGAGTAtgtcacacaaagacacaatcCAACAGGATCTGAGCACAGAAGAGAGGCACTCAGTAATCTGGATCCAAGGAACGTTCCACAAAAGCTAAACAGAGCTGGATCTATCACAAAATGGGAGCACACAAAAATGCAGTTGGATGAAATGGATACTGTTTCAGACCAGCATAATGACCTAGAGACTCTTAACATTAAACCCCAGTGCTACATtctgaacaaaaaacacagaagagtTAATTGGAGACCCTGTAGTTACTGTGCACAGTGTATAATTACTGCTCGCAATGTCAAAATACACCAGCACATCCACAGAGAAGAAAGGCTATACAGCTAAGTTCAGTTTGGAAACAAATTCAGCCAGTCAAGGAGCCTTAAGTTAAACCAGAtaattcacacaggagagagaccttACAGCTGTGTTCAGTGTGGAAAAGGTTTCATTACATCAGGAAATCTGAGACTTACCAAACTCACACAGTCTCACCATATAGCTATACTCTGTGTAAAAAAGGTGAATTACTGCATCTGAGCTTAAGAAACACCTGCAAATTCACACATCACATGGCTGTGCTCAACTGCAAATGTATGAAACACATGTGCGGGCACATCAAAGCCCACTGACAGACCCACACAGGAGGCTGAGGATGAATAGCCAATAATGTGAATcctaatgaaaaatgaaagtaCAAGACTGATGGACTTGTTCTCAAATTGTTAGCTTTTTGAACATGTTAATAGACATTACATAATTTAAGgtaattaagaaaaaagtttTCAGCTGTTGGTGCATTAACAAGGCAATGTCTTAAAACAAGAATATATTGGAGcagagattacattttaatgcaattagttttttttaatgtttttaaagacaaactGAACTAAagagcaaatgttttattttccatgtaatTGTAAGAGCAGGTAAATGTATATAGGTGAGCTGAATGATTTATTAAGCTTTGTTTAAATCTGATGGGTGAATAAGGATTGGTTGTATTATCCTTTCACTTTAAAATAGATCAGTCCTTTTGTCAAGAGAAATAAACTATtatagaaaatattgtgttgtgtggAAGGGGTACAGTTAGTTTGATCAAATGGAAAGCATAGAACTTGTGACTATTGAAAGCATATTTTTAGTAATTATTGGCAACAGTGCATTTTTGTGGGTGCCTTTTTCCac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU164189 lncRNA upstream 158355 26793271 ~ 26793553 (+) True G131021
TU164185 lncRNA upstream 180747 26770880 ~ 26771161 (+) True G131017
TU164097 lncRNA upstream 616618 26296707 ~ 26335290 (+) True G130948
TU164023 lncRNA upstream 889215 26061148 ~ 26062693 (+) True G130884
TU163974 lncRNA upstream 1202407 25735555 ~ 25749501 (+) False AMCG00001337
TU164243 lncRNA downstream 24178 26978775 ~ 26980289 (+) True G131072
AMCG00001361 mRNA upstream 71111 26859094 ~ 26880797 (+) True AMCG00001361
AMCG00001363 mRNA upstream 113643 26836487 ~ 26838265 (+) True AMCG00001363
AMCG00001360 mRNA upstream 406399 26537952 ~ 26545509 (+) True AMCG00001360
AMCG00001357 mRNA upstream 432623 26511557 ~ 26519285 (+) True AMCG00001357
AMCG00001356 mRNA upstream 462917 26481391 ~ 26488991 (+) True AMCG00001356
AMCG00001364 mRNA downstream 50048 27004645 ~ 27042352 (+) True AMCG00001364
TU164194 other upstream 88776 26856599 ~ 26863132 (+) False AMCG00001361
TU163730 other upstream 2360433 24584179 ~ 24591475 (+) False AMCG00001315
TU163702 other upstream 2497523 24433793 ~ 24454385 (+) True G130616
TU163362 other upstream 3785252 23166263 ~ 23166656 (+) True G130335
TU162879 other upstream 5675029 21271384 ~ 21276879 (+) True G129913

Expression Profile