RNA id: TU157309


Basic Information

Item Value
RNA id TU157309
length 269
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G125516
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 128859 ~ 129127 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tctttggtgtggaaccttatcaaaagctttttggaaatctaagtatatcatatcatatgctttcacatgatctacagctgcagttgcatgttcaaaaaattctaataaattagtaagacatgacctgcctcgtctaaacccatgttgactatctccaagaatatggttttcattaagatgctcctctattttctgtctaatcattttttccaacatttcacaggtgatgcaggtgagactgattggtctgtaatttcctggctcagttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157299 lncRNA upstream 11557 116111 ~ 117302 (+) True G125510
TU157269 lncRNA upstream 36239 92283 ~ 92620 (+) True G125485
TU157268 lncRNA upstream 37574 91043 ~ 91285 (+) True G125484
TU157379 lncRNA downstream 210513 339640 ~ 341771 (+) True G125561
TU157380 lncRNA downstream 210513 339640 ~ 403591 (+) False G125561
TU157384 lncRNA downstream 225361 354488 ~ 355729 (+) True G125565
TU157423 lncRNA downstream 327375 456502 ~ 487203 (+) True G125597
TU157432 lncRNA downstream 400772 529899 ~ 531912 (+) True G125605
AMCG00000681 mRNA upstream 88263 38752 ~ 40596 (+) True AMCG00000681
AMCG00000680 mRNA upstream 102578 21907 ~ 26281 (+) True AMCG00000680
AMCG00000683 mRNA downstream 8978 138105 ~ 143895 (+) True AMCG00000683
AMCG00000694 mRNA downstream 238449 367576 ~ 414428 (+) True AMCG00000694
AMCG00000695 mRNA downstream 285317 414444 ~ 414795 (+) True AMCG00000695
AMCG00000702 mRNA downstream 982754 1111881 ~ 1133185 (+) True AMCG00000702
AMCG00000705 mRNA downstream 1097190 1226317 ~ 1233934 (+) True AMCG00000705
TU157377 other downstream 210513 339640 ~ 341771 (+) False G125561
TU157655 other downstream 1470569 1599696 ~ 1600639 (+) False AMCG00000723
TU157662 other downstream 1539718 1668845 ~ 1696247 (+) True AMCG00000729
TU159397 other downstream 8488072 8617199 ~ 8620195 (+) True G127134
TU159756 other downstream 10018730 10147857 ~ 10154187 (+) False AMCG00000949

Expression Profile