RNA id: TU157377


Basic Information

Item Value
RNA id TU157377
length 864
RNA type TUCP
GC content 0.54
exon number 5
gene id G125561
representative False

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 339640 ~ 403591 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGAGAGCCCGAGGAAGAAGAGACGATGGCCAGCAGTCACCAGAGATActtttttaaaagtttatttagTGAAATGACATTACAGAGAATAAATTAAGACTTTGAGGAGCAGAGTGTTGTGAGTGGTGGGCAGTGTGTCCGCAGGCTGGGCTGGAGGCCAGCGGGGGGTGGGTGTGCCACGGCACAGCGAGGAGAGGGACCCCTCCTTGGGAGAGTGTCCATCTTCCGCTCACACCCCCGGACAGACGCTGCCAGGACCGAGGGGAGAGGGCTGCAGGAGGTTGAAGGgttcccaaaaaaaaaaaagcaaacagaaagaaaaaaaatacatcccatagtcctttttttcctttgttggtCTACAAAATGGTGAAATGGATGTCCTGACACCATCAGGTCTTCAGATACAGTTCAACAACCACACCAGTCGCTTGAGTATCTCTTACACAGACATGATGTGCTTGACGAAAGTCGTAGGCGATGCAGCCGTTCTCGTCTTCCTGTCCCTGGAGCAGAGTGTCTACCTCAGCCTCAGTCATCTTCTCCCCAGTGTGGTCAGCACAATGCGCAGCTCAGCGCCCATCACTGTGCCGTTGCCCTCCTTGTCAAAGACACGCAGACCCTCAACAAAGTCCTCGTAGCCGCCCTTCTCTGTGCTGTTGGCCACGGTCTGGAGCATGGGCAGGAACTGGTCGAAGTCAATGGCCTTGGCATTCATTCCTCGGGGGTGGGGTTGCCCAGGACCTTGTTCACCTCCTTGTTGGTGGGGTTCTGGCCCAGAGCGCGCATGACGTCGGCCACCTGGCTGTAGGTGATCTTGCTCTGGCCGGTCCTGTCGAAGAGGAGGAAGGCCTCTTTGAagtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157309 lncRNA upstream 210513 128859 ~ 129127 (+) True G125516
TU157299 lncRNA upstream 222338 116111 ~ 117302 (+) True G125510
TU157269 lncRNA upstream 247020 92283 ~ 92620 (+) True G125485
TU157268 lncRNA upstream 248355 91043 ~ 91285 (+) True G125484
TU157384 lncRNA downstream 12717 354488 ~ 355729 (+) True G125565
TU157423 lncRNA downstream 114731 456502 ~ 487203 (+) True G125597
TU157432 lncRNA downstream 188128 529899 ~ 531912 (+) True G125605
TU157439 lncRNA downstream 233519 575290 ~ 575492 (+) True G125612
TU157440 lncRNA downstream 255016 596787 ~ 597135 (+) True G125613
AMCG00000683 mRNA upstream 195745 138105 ~ 143895 (+) True AMCG00000683
AMCG00000681 mRNA upstream 299044 38752 ~ 40596 (+) True AMCG00000681
AMCG00000680 mRNA upstream 313359 21907 ~ 26281 (+) True AMCG00000680
AMCG00000694 mRNA downstream 25805 367576 ~ 414428 (+) True AMCG00000694
AMCG00000695 mRNA downstream 72673 414444 ~ 414795 (+) True AMCG00000695
AMCG00000702 mRNA downstream 770110 1111881 ~ 1133185 (+) True AMCG00000702
AMCG00000705 mRNA downstream 884546 1226317 ~ 1233934 (+) True AMCG00000705
AMCG00000708 mRNA downstream 906970 1248741 ~ 1249425 (+) True AMCG00000708
TU157655 other downstream 1257925 1599696 ~ 1600639 (+) False AMCG00000723
TU157662 other downstream 1327074 1668845 ~ 1696247 (+) True AMCG00000729
TU159397 other downstream 8275428 8617199 ~ 8620195 (+) True G127134
TU159756 other downstream 9806086 10147857 ~ 10154187 (+) False AMCG00000949
TU160309 other downstream 11657893 11999664 ~ 12011425 (+) True AMCG00001002

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00000166 True 803 lncRNA 0.50 5 NC_007112.7 7546683 ~ 7554215 (+)
grasscarp (Ctenopharyngodon idella) TU467957 False 1438 lncRNA 0.48 6 CI01000299 4121679 ~ 4126723 (-)