RNA id: TU157432


Basic Information

Item Value
RNA id TU157432
length 2014
lncRNA type inter_gene
GC content 0.57
exon number 1
gene id G125605
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 529899 ~ 531912 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCACCagatcacatttatttatttactctgtaCAATTATATTAGAAACTTCAAAACCTTCCTCAATCCTCACTTTGGGGCGCGACCAGCTGTATTGGTTCTTGCCACAAATTACCAGAACTTCTTTATGAACCGTAATTCATGGTCATTTCACCCAGATTTTATTCTTCAGCCTCCAACGATTAATTTCAGTAACTGACTGAACCTTTTGCAACCAAGAAAAGTCAGACAAGTgtcaaacaacaacacacttgCACTGATAAACCCTGTTGCGCTGCACGTGCAGGAGGTCAACGATATCGCGCGTGGTTCTTATTGGGCCGATGACGGGCACACCAGATAATCCATGTCACCAGAACACGGTGCCAGATGTGCTTCGAGAGAAAAACTATTGAAAACTAGGATTGATTTGCCATTTCCATCTGTTCCGCTGGCCAGACACTGGGCAATGAATTACAGTCATAAAGAAGCTCTGCACACAAACCCCCTAATTGAACTGACACCCCGTCACCCCGTCACCTTGAGGTGTCCGTTCCCACTGGCCGGGCTCCCTGGCAAAGGTCCAGAGCCCGGAGGAGCCTTCGTGCACCCTGGCTGATTGCCATATTGCTTCAACCCTTGCCCACTTCCTGGAGACAGGGAAGGAGAACTGAGTGACCAAGGACAGTAAGACCAGCCTGCGCCCACACCCCCCCCGAGCAGCATCCCTGTCAAACCCCACAgtgtgttgttgcttttttccccatcGATTTCCTGTTGTGTGTTGCGTTGTTGTTTTCCAGCTCACGTGGGACCAGGGCAGATCGCCGGCAGCGCTCGACACCTCCCTGGGGTGAAACGGAGAGACGGGTCGCTCCACAGTCTGCGGGAGGGATGCTGGGGCAGGTGGGCGTCCTGATCCgagtgtgcgtgtctgtgtgtgtgtgtgcgcgtgtgtgacAGTTTGCGGGGTTTCCCCACACGTGTCAACATTGTCTTTGTTTCCAGTTCCGAGGTTTGCAAAAAAGAAAGTCTCGCTCAGAAAGCTCTCGCACAGGGAAACGGCACCGAAGACCAGGCACCTCCGCCGCCCCTCGATCGATGCTGGCTAGAGAATAAACGCTCCCCCCAGCCAtccccggcccggcccggcgcGCCGCCTGCTACACCACAGTGTTCCTCTGGCGGTAGGGGGGGGGCGGCAGCACGTTGCCGGGCTTCAGGGAGAACTCGGACAGGTACTCGGGGTTCTCCGCCACCACCGGCCGGATGCGCCCGTTCTGTTTGTAGAAGAACTTGGTGTTGCACTCCGGCAGGTACTCGGGGTTGTGCAGCGTGGACTTGGGTGGCAGGCTGTGGTGCCAGTACTCCGGATTGTCGAACGTCTTCTTGGGCTTCTTGTCGGCCAGCGTGCCGGTGGTGGCGGCCGTGTGGGCGATGGCGAGGGCGGGGTGCGGTGGGTGGGGGTGCGGCGGAGGCGGCGGCAGCCCGTTCTTCTTCAGGAACTCGGGGTTCTTGTCGGCCCCGGCGTTGTGGAAGGTGTTGAGGTACAGCGGCTCGTTCACGTACTCGTCCTCCAGCCGGGGCTGTCCGTTGGGCGCGGCATGGCCGTGGTAGCCGGGGTTGTCCAGCGCGTGCACGTCCCCATTCTTGCGCCGCGTCACGAAGGGGTTCTCCTCCACGGGGTTGAGATAGTCTGCGCCAGGAGACAAGAGCGTGAGACAGAAGGAGATGGAGACCTGGGGTTAGCGGGCGTTAAAGAGCAGtcaacatacagacacacaaaacaatccCGGCTCCTGTTCTTTGGCAGCTTCCTCTGCCACGCGGGCCGGAGAAAAGCTCTCCTGGAGCCGCCTCAAGCTGTGCCACCGCAGACAGATGCTGGGAGCACAGAGCCAGAGAGCTGACGTCTCAGGGATCACACGAGACGCACGAGCGCTGCCTTTAAGAACACGTGAGTGAGAGACATTTACGGACGGACATGCTATAATCGgctgaaacaaacacaacaatgtaCAGAGGCACGCTGATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157423 lncRNA upstream 42696 456502 ~ 487203 (+) True G125597
TU157380 lncRNA upstream 126308 339640 ~ 403591 (+) False G125561
TU157384 lncRNA upstream 174170 354488 ~ 355729 (+) True G125565
TU157379 lncRNA upstream 188128 339640 ~ 341771 (+) True G125561
TU157309 lncRNA upstream 400772 128859 ~ 129127 (+) True G125516
TU157439 lncRNA downstream 43378 575290 ~ 575492 (+) True G125612
TU157440 lncRNA downstream 64875 596787 ~ 597135 (+) True G125613
TU157522 lncRNA downstream 772183 1304095 ~ 1307335 (+) True G125684
TU157523 lncRNA downstream 772183 1304095 ~ 1307335 (+) False G125684
TU157524 lncRNA downstream 772183 1304095 ~ 1307335 (+) False G125684
AMCG00000695 mRNA upstream 115104 414444 ~ 414795 (+) True AMCG00000695
AMCG00000694 mRNA upstream 115471 367576 ~ 414428 (+) True AMCG00000694
AMCG00000683 mRNA upstream 386004 138105 ~ 143895 (+) True AMCG00000683
AMCG00000681 mRNA upstream 489303 38752 ~ 40596 (+) True AMCG00000681
AMCG00000680 mRNA upstream 503618 21907 ~ 26281 (+) True AMCG00000680
AMCG00000702 mRNA downstream 579969 1111881 ~ 1133185 (+) True AMCG00000702
AMCG00000705 mRNA downstream 694405 1226317 ~ 1233934 (+) True AMCG00000705
AMCG00000708 mRNA downstream 716829 1248741 ~ 1249425 (+) True AMCG00000708
AMCG00000704 mRNA downstream 724869 1256781 ~ 1272965 (+) True AMCG00000704
AMCG00000715 mRNA downstream 863484 1395396 ~ 1395970 (+) True AMCG00000715
TU157377 other upstream 188128 339640 ~ 341771 (+) False G125561
TU157655 other downstream 1067784 1599696 ~ 1600639 (+) False AMCG00000723
TU157662 other downstream 1136933 1668845 ~ 1696247 (+) True AMCG00000729
TU159397 other downstream 8085287 8617199 ~ 8620195 (+) True G127134
TU159756 other downstream 9615945 10147857 ~ 10154187 (+) False AMCG00000949
TU160309 other downstream 11467752 11999664 ~ 12011425 (+) True AMCG00001002

Expression Profile