RNA id: TU157439


Basic Information

Item Value
RNA id TU157439
length 203
lncRNA type inter_gene
GC content 0.64
exon number 1
gene id G125612
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 575290 ~ 575492 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCACACGCCGCTCAGTCCTACCTTGGCGATCTGGACACACCAGTTGAGCAGCAGCTGGGAGCCGATGTTGTCCTTGTGCTCGTGCACGTAGTCCAGCAGGCAGCCGTGGGGCATCAGCTGCGTCACCAGCTGGATGGTGGGGCTGAGACACACGCCTAGCAGCCGGACCAGGTGGGGGTGCTCCATGCTGGCCATGATCAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157432 lncRNA upstream 43378 529899 ~ 531912 (+) True G125605
TU157423 lncRNA upstream 88087 456502 ~ 487203 (+) True G125597
TU157380 lncRNA upstream 171699 339640 ~ 403591 (+) False G125561
TU157384 lncRNA upstream 219561 354488 ~ 355729 (+) True G125565
TU157379 lncRNA upstream 233519 339640 ~ 341771 (+) True G125561
TU157440 lncRNA downstream 21295 596787 ~ 597135 (+) True G125613
TU157522 lncRNA downstream 728603 1304095 ~ 1307335 (+) True G125684
TU157523 lncRNA downstream 728603 1304095 ~ 1307335 (+) False G125684
TU157524 lncRNA downstream 728603 1304095 ~ 1307335 (+) False G125684
TU157567 lncRNA downstream 748011 1323503 ~ 1328639 (+) True G125713
AMCG00000695 mRNA upstream 160495 414444 ~ 414795 (+) True AMCG00000695
AMCG00000694 mRNA upstream 160862 367576 ~ 414428 (+) True AMCG00000694
AMCG00000683 mRNA upstream 431395 138105 ~ 143895 (+) True AMCG00000683
AMCG00000681 mRNA upstream 534694 38752 ~ 40596 (+) True AMCG00000681
AMCG00000680 mRNA upstream 549009 21907 ~ 26281 (+) True AMCG00000680
AMCG00000702 mRNA downstream 536389 1111881 ~ 1133185 (+) True AMCG00000702
AMCG00000705 mRNA downstream 650825 1226317 ~ 1233934 (+) True AMCG00000705
AMCG00000708 mRNA downstream 673249 1248741 ~ 1249425 (+) True AMCG00000708
AMCG00000704 mRNA downstream 681289 1256781 ~ 1272965 (+) True AMCG00000704
AMCG00000715 mRNA downstream 819904 1395396 ~ 1395970 (+) True AMCG00000715
TU157377 other upstream 233519 339640 ~ 341771 (+) False G125561
TU157655 other downstream 1024204 1599696 ~ 1600639 (+) False AMCG00000723
TU157662 other downstream 1093353 1668845 ~ 1696247 (+) True AMCG00000729
TU159397 other downstream 8041707 8617199 ~ 8620195 (+) True G127134
TU159756 other downstream 9572365 10147857 ~ 10154187 (+) False AMCG00000949
TU160309 other downstream 11424172 11999664 ~ 12011425 (+) True AMCG00001002

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00000158 True 2844 mRNA 0.48 10 NC_007112.7 7414318 ~ 7448795 (+)