RNA id: TU157567



Basic Information


Item Value
RNA id TU157567
length 521
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G125713
representative True

Chromosome Information


Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 1323503 ~ 1328639 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


cttagattttcaaaaagcttttgataaggttccacaccaaagactgatcctcaaattggaagctgtaggcattcagggtaatgtaagtagatggattatgaactggttgatgtctaggaaacagagggtgtcgattagaggagtcgcttctaactggagtgaggttgttagtggagttccacagggatcagtactagggcctttgctttttctaatctatattaatgatctggactctgggatcgttagcaaacttgtcacatttgcagatgatactaaaataggcaAACAcgatgctagggtatattgtcaaaagtgtagagttgagaacaagggcagtgatgttcagactgtacaatgcactagttagagctcatctggatactgtggacagttctgggctccacacttcaagaaagatatcgctgctctagaggcagttcagaggagagcaaccagacttattccaggtctgaagggaatgtcctactgagagactgagggacctgaaccttttcacc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU157522 lncRNA upstream 16168 1304095 ~ 1307335 (+) True G125684
TU157523 lncRNA upstream 16168 1304095 ~ 1307335 (+) False G125684
TU157524 lncRNA upstream 16168 1304095 ~ 1307335 (+) False G125684
TU157440 lncRNA upstream 726368 596787 ~ 597135 (+) True G125613
TU157439 lncRNA upstream 748011 575290 ~ 575492 (+) True G125612
TU157592 lncRNA downstream 97994 1426633 ~ 1426943 (+) True G125736
TU157646 lncRNA downstream 266184 1594823 ~ 1609210 (+) True G125767
TU157621 lncRNA downstream 289169 1617808 ~ 1621888 (+) True G125756
TU157676 lncRNA downstream 483044 1811683 ~ 1814157 (+) True AMCG00000734
TU157877 lncRNA downstream 963196 2291835 ~ 2293872 (+) True G125955
AMCG00000704 mRNA upstream 50538 1256781 ~ 1272965 (+) True AMCG00000704
AMCG00000708 mRNA upstream 74078 1248741 ~ 1249425 (+) True AMCG00000708
AMCG00000705 mRNA upstream 89569 1226317 ~ 1233934 (+) True AMCG00000705
AMCG00000702 mRNA upstream 190318 1111881 ~ 1133185 (+) True AMCG00000702
AMCG00000695 mRNA upstream 908708 414444 ~ 414795 (+) True AMCG00000695
AMCG00000715 mRNA downstream 66757 1395396 ~ 1395970 (+) True AMCG00000715
AMCG00000712 mRNA downstream 85156 1413795 ~ 1422116 (+) True AMCG00000712
AMCG00000713 mRNA downstream 104353 1432992 ~ 1447408 (+) True AMCG00000713
AMCG00000714 mRNA downstream 123973 1452612 ~ 1463637 (+) True AMCG00000714
AMCG00000717 mRNA downstream 226039 1554678 ~ 1575439 (+) True AMCG00000717
TU157377 other upstream 981732 339640 ~ 341771 (+) False G125561
TU157655 other downstream 271057 1599696 ~ 1600639 (+) False AMCG00000723
TU157662 other downstream 340206 1668845 ~ 1696247 (+) True AMCG00000729
TU159397 other downstream 7288560 8617199 ~ 8620195 (+) True G127134
TU159756 other downstream 8819218 10147857 ~ 10154187 (+) False AMCG00000949
TU160309 other downstream 10671025 11999664 ~ 12011425 (+) True AMCG00001002

Expression Profile