RNA id: TU162326



Basic Information


Item Value
RNA id TU162326
length 657
RNA type TUCP
GC content 0.63
exon number 2
gene id G129453
representative True

Chromosome Information


Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 18545893 ~ 18547915 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TCTCCGGTGGGGGTACTGAGGAATTTGGCCCCCTCCTCGGAGCTCTTCTCCGCACCGTCCTCGCCCCCCTGGTCCTCTCCGTTGCCCCTCTCTGTGTCAGACCGGTACACGATGATGGACTCCGGCCGAGGctccttcttcctcctcttcctccgcGTCGTGCCGGTTTCCTCGTCCTCCAGAGGGCCGCTGGCGACCTCTGACCTCCGCAGTGAGGCCAGCCTGGGGCTCTCGGCCCCCCGGCGACTCACCTGCTCCATGCCGAGTGCCCCCTGGGACACCTCCTCTCGCATTCGCGTCACCTTTCAACCTCCCTCAGGCAGCGCGAAGGACAGCAGTGAACTCCATGCTGCTGGAGCACAATACACACAGCTTCTTTAAAAAAGGGGCCACGGGTCCGGGTTATTCAAAATCCAAGTGTAACGGCGTTGTGCTCAATCTTTCACAAATCAATCTGCTGTGGAAGAAACCGAAATCAATACCCAGCTCCTTCCCCGGCCGAGCTTCTGCGAGTTGCCGCACAAAGGAGCCCGAGAGTCGGATTCCAGGGTCCTGTTCGCCCCGCCCCGCTGCTCTCCAACCCCAGGACCTGGCCAATCCGAGAGGGCGGCGCCGAGCGCACACAGCCGGCCTGCCTCCACAGCGAGGCTCGGGGAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU162181 lncRNA upstream 568957 17972009 ~ 17976936 (+) True G129343
TU162082 lncRNA upstream 853367 17691507 ~ 17692526 (+) True G129255
TU162040 lncRNA upstream 995102 17487392 ~ 17550791 (+) True G129221
TU161853 lncRNA upstream 1398824 17144190 ~ 17147069 (+) True G129080
TU161844 lncRNA upstream 1653532 16889638 ~ 16892361 (+) True G129071
TU162309 lncRNA downstream 7236 18555151 ~ 18557104 (+) True G129442
TU162310 lncRNA downstream 7236 18555151 ~ 18557104 (+) False G129442
TU162442 lncRNA downstream 248935 18796850 ~ 18802040 (+) True G129552
TU162443 lncRNA downstream 248935 18796850 ~ 18802040 (+) False G129552
TU162512 lncRNA downstream 540233 19088148 ~ 19090238 (+) True G129597
AMCG00001189 mRNA upstream 40763 18499105 ~ 18505130 (+) True AMCG00001189
AMCG00001188 mRNA upstream 51292 18462098 ~ 18494601 (+) True AMCG00001188
AMCG00001190 mRNA upstream 134839 18374499 ~ 18411054 (+) True AMCG00001190
AMCG00001191 mRNA upstream 198835 18324606 ~ 18347058 (+) True AMCG00001191
AMCG00001186 mRNA upstream 245687 18267076 ~ 18300206 (+) True AMCG00001186
AMCG00001195 mRNA downstream 232019 18779934 ~ 18784243 (+) True AMCG00001195
AMCG00001203 mRNA downstream 340369 18888284 ~ 18889722 (+) True AMCG00001203
AMCG00001202 mRNA downstream 344017 18891932 ~ 18907617 (+) True AMCG00001202
AMCG00001207 mRNA downstream 434365 18982280 ~ 19039418 (+) True AMCG00001207
AMCG00001212 mRNA downstream 546242 19094157 ~ 19094534 (+) True AMCG00001212
TU162207 other upstream 501642 18023060 ~ 18044251 (+) True G129365
TU161504 other upstream 3125013 15409112 ~ 15420880 (+) False G128823
TU161370 other upstream 3371746 15169911 ~ 15174147 (+) True AMCG00001098
TU160309 other upstream 6534468 11999664 ~ 12011425 (+) True AMCG00001002
TU159756 other upstream 8391706 10147857 ~ 10154187 (+) False AMCG00000949
TU162312 other downstream 7236 18555151 ~ 18558174 (+) False G129442
TU162456 other downstream 340476 18888391 ~ 18889724 (+) False AMCG00001203
TU162506 other downstream 495389 19043304 ~ 19142145 (+) True G129594
TU162623 other downstream 938223 19486138 ~ 19489600 (+) True AMCG00001223
TU162705 other downstream 2063357 20611272 ~ 20676857 (+) True AMCG00001236

Expression Profile