RNA id: TU162840


Basic Information

Item Value
RNA id TU162840
length 1736
RNA type TUCP
GC content 0.55
exon number 1
gene id G129877
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 21077135 ~ 21078870 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctccacctcaagctctgagtccttatgaggacccagagacaggcagtcctcctcccaggtggcccgtctgctgccccctgctgggatggggcagacagactcccttCAGTCTCCACCAGAAGCTTTGGTCCATCCTACTAttgagagcaaggatggcctcatcgcgcTCACTGTCCGCTGATCCTGACCTCCTTCGCCGACGACGCAGCGGAGAGAAAGCCAGCAAAAACTCGGAAAAGAGGGAAAGAGCCCGGGGGCGTCGCTCCACCGCTCTTCCTTGTCGCTCATGTGTGCACAACCACGCAACCGCGGGCACTGCAGGCAAGGGGGGCGTGGCTGTCGCGGGGGacgcagctgccgtggcaggtgcggaAGCGACAGCCAGCGCAGCAGCGGGGGCAGGAGGAGACGCAGGCGCAGGCTGTCTCTGatcctgcagccctggaggaggaggcggggggGCTCGGAGAGAGGTGGAGGTCCAGGACCCTCGAAGCCCCCCCGTCACTCACCGGAGTGGGGGATCTCTGGACGTGGCGGCGATTGCGGCGGCGCCCGGTGAAATGGCGGACCTCCGAGCGCGCCGTAGCGGACCCGGAAGtcgcgggctgtagtgcaggcgcaagccggcggaggagcacctcacgcagGCGAGATCTCTTctgacacaccgaggctcaggccgggcagccgcgACTCGGATTTTACTgacgctgctagcgctcctgctgtggaggaaaaaggcctgtggacaaaaaaccaacacagcaagcagtcggaatattagacactatataaacacgactattatttttaaagtgtcctatttgtagccgaaactgaaaccgaagcgcACCAGAGCCCCGGAGTGCGGACGGAACAGAGTCAGATCAaggcgaagaggcaaaagaggatgaacctgcgctgacgtcgtgttttatagaacaggaagtgggaagggacctgttctgagtgaagagcgcaggggccaatggcagctttgatagagtgacgtttcgatcaggttcccgcGGAAGAGCGCataaacccctcccccttgggcagtgcttccgacttgaaagataactgtaatacagtataaaattacagatcaaaaccaTAATATTGTAATGAGTTGAGGGGCCGGGTCTTCGATCATCATTATGTGCCTGCCCTAATTTTCTCTTTTGCCATagacaggaccatggacagcagagcCAGACCCTCCATGGATCAGGAACATGGACAGCCTAATGGAAAAACACTGGCAAGGCAGCAGAACAGCCTCACCTGCCTGTGATTACAAATCACCCAGACTGCAAGCAGGTGTGGCTGATTAGTACAGACTATTTAAACTCACCCTGTGGTTTCTTCTTGGTCTTAGAatggggtgggggaggaagACAAGGAGGGTGACTAGAGGAGCAAAGAAAGGACAAAGTAATTGGATTGGAAACTAGATGACAActtggactggctgaggacctTGAACGGCGTTTGGATTGTTTTGGAAGACTACGACCCTGGTGAAGACCCCTGAAACCCCGTTTTGACCATGAGACTGCCTAACCCCTCAAGACTGTTTAGTTTGTCAGTCTTTGTTTGTTAACCCTGGGAAACCGCTTAGCTGTCCAAGGCCAGTCaggaattttgtttttgtgtagcaGACCATTCCTGCTACAGAAAGTGCTCTGTACAAAGagctaggtttttgttttccaggacagaactaaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162700 lncRNA upstream 480383 20596431 ~ 20596752 (+) True G129756
TU162668 lncRNA upstream 580790 20464363 ~ 20496345 (+) True AMCG00001229
TU162663 lncRNA upstream 771278 20305643 ~ 20305857 (+) True G129719
TU162651 lncRNA upstream 982068 19995027 ~ 20095067 (+) True G129708
TU162636 lncRNA upstream 1295273 19781647 ~ 19781862 (+) True G129696
TU162870 lncRNA downstream 162467 21241337 ~ 21241568 (+) True G129904
TU162936 lncRNA downstream 330064 21408934 ~ 21409691 (+) True G129961
TU162949 lncRNA downstream 377149 21456019 ~ 21456860 (+) True G129972
TU162961 lncRNA downstream 462593 21541463 ~ 21541672 (+) True G129984
TU162964 lncRNA downstream 472560 21551430 ~ 21554095 (+) True G129985
AMCG00001243 mRNA upstream 81673 20968716 ~ 20995462 (+) True AMCG00001243
AMCG00001241 mRNA upstream 154421 20906371 ~ 20922714 (+) False AMCG00001241
AMCG00001239 mRNA upstream 205492 20858612 ~ 20871643 (+) True AMCG00001239
AMCG00001238 mRNA upstream 220791 20847770 ~ 20856344 (+) True AMCG00001238
AMCG00001240 mRNA upstream 232908 20843118 ~ 20844227 (+) True AMCG00001240
AMCG00001248 mRNA downstream 36405 21115275 ~ 21118948 (+) True AMCG00001248
AMCG00001250 mRNA downstream 102767 21181637 ~ 21203572 (+) True AMCG00001250
AMCG00001249 mRNA downstream 145735 21224605 ~ 21226842 (+) True AMCG00001249
AMCG00001252 mRNA downstream 225403 21304273 ~ 21315646 (+) True AMCG00001252
AMCG00001253 mRNA downstream 240600 21319470 ~ 21340288 (+) True AMCG00001253
TU162800 other upstream 134738 20942072 ~ 20942397 (+) True G129843
TU162792 other upstream 151895 20918558 ~ 20925240 (+) True AMCG00001241
TU162705 other upstream 400278 20611272 ~ 20676857 (+) True AMCG00001236
TU162623 other upstream 1587535 19486138 ~ 19489600 (+) True AMCG00001223
TU162506 other upstream 1934990 19043304 ~ 19142145 (+) True G129594
TU162879 other downstream 192514 21271384 ~ 21276879 (+) True G129913
TU163362 other downstream 2087393 23166263 ~ 23166656 (+) True G130335
TU163702 other downstream 3354923 24433793 ~ 24454385 (+) True G130616
TU163730 other downstream 3505309 24584179 ~ 24591475 (+) False AMCG00001315
TU164194 other downstream 5777729 26856599 ~ 26863132 (+) False AMCG00001361

Expression Profile