RNA id: TU162879


Basic Information

Item Value
RNA id TU162879
length 1383
RNA type TUCP
GC content 0.44
exon number 8
gene id G129913
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 21271384 ~ 21276879 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACCTGTGACCATGCCATCCTGCTCTCAGGTCGAAATACATCCATGACCAGAAGGAGAAAAATGAGAGGCAGTTCCTGCAGGACTTAGAGTTAATCTCTGACAGGCTGCAGGAAATTCCCATTAGCGATATGGTTAAGgCCACTAAGAGCCCTGTGTGTCCCCTGGACCCCAGTCGGCTGACAAGGATGAACTCTGTCCCTGTCCTTACCCCCTTCTTTTGCCAACCGTGGCATACAGCCCATGGGGGGACATGGCCCAGAGTCTTTGTCCCCCCAGCCCTCAGCAGAGGGTCGCTGGTACTCCCAGCAAGGCGAGAGGATGGAGGCGCGAATCATCATCAGCGTGTCATTCATGGATGAGGTTCAGCTCAACAAGGCCAAGACGGCCTGGAAGCCTAGGATAAAGCAGGCTTCCACAGTGGGTGATGACCCCGAGGTCATTATTACCCAGGTTCGAAGAGGAGCTCAAGGCGAAACACACGAACACGATTTCTCTCCTGATAGAATTCTGCCACTGCCTTCAGCATTCCGTGGCAGAACACGATCGCAGAACTGTTGCTGGAAGGTCCCGGGTGGTAATTAAAGACATCATATGCATTCCGTTCAGTACACGATAATTCTTGGAAGATACCAAGGGATcaggaaaaggagaaaatagCTGCAGAGGGGCTGACTGGCAAAATTAATCTGGACTCTACCTGGAATGTTCAAGAAATGCAGCAGGAAATTCAACCATTATTCCAAAACAAATTCAGTACAGATGGAGATCAgcttgctttttcctttttacagtgtTTGCCAGGGGCAAGGAAACTAATTAGACCCAACATATCTGCCAGTTTTTCCTGGAATGGAGCTGAAGTTATTAGTCTGACAGGACAAGGAGCTTTGTACATTCCCAGTCACCACAATTTGCCAGAAAATTAGGAAGATGAAACCCCAAATGTGGAGAATCCAACACTCCAAACTTCAGTAAGACTTGATACGCAAAACAATAATTCACAAGTACAAGAACCGACTTTACTTCATCCAAGAGATGTCAGTGCAGAAAGGTAATGTCTAAACATGTATGttgtttcaaaaacaaagttgTGTGACTTGGCTTTGAAATTGTGTTGATTGTAAGCATTTATGTTAGATTCATTTATGGGAAGGCAGTTAATTTGATGAGAGAAACTGAGAGTGCTGATTTGACAGTTTAAATGTTATAGCTGCTCATGATTTATAACATATggattgcatttaaatatttttttactgcagAAAAGTCGAATTTAATTGATAATCAAACTTGTTATCTCAGTGTATTTAATAGCATACTTTCAGAGTATAAGGAGGTAGACATTTCTGAGGGTATTCCCGCTGTGGcaagtagatagtaggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162870 lncRNA upstream 29816 21241337 ~ 21241568 (+) True G129904
TU162700 lncRNA upstream 674632 20596431 ~ 20596752 (+) True G129756
TU162668 lncRNA upstream 775039 20464363 ~ 20496345 (+) True AMCG00001229
TU162663 lncRNA upstream 965527 20305643 ~ 20305857 (+) True G129719
TU162651 lncRNA upstream 1176317 19995027 ~ 20095067 (+) True G129708
TU162936 lncRNA downstream 132055 21408934 ~ 21409691 (+) True G129961
TU162949 lncRNA downstream 179140 21456019 ~ 21456860 (+) True G129972
TU162961 lncRNA downstream 264584 21541463 ~ 21541672 (+) True G129984
TU162964 lncRNA downstream 274551 21551430 ~ 21554095 (+) True G129985
TU162969 lncRNA downstream 330961 21607840 ~ 21608250 (+) True G129989
AMCG00001249 mRNA upstream 44542 21224605 ~ 21226842 (+) True AMCG00001249
AMCG00001250 mRNA upstream 67812 21181637 ~ 21203572 (+) True AMCG00001250
AMCG00001248 mRNA upstream 152436 21115275 ~ 21118948 (+) True AMCG00001248
AMCG00001243 mRNA upstream 275922 20968716 ~ 20995462 (+) True AMCG00001243
AMCG00001241 mRNA upstream 348670 20906371 ~ 20922714 (+) False AMCG00001241
AMCG00001252 mRNA downstream 27394 21304273 ~ 21315646 (+) True AMCG00001252
AMCG00001253 mRNA downstream 42591 21319470 ~ 21340288 (+) True AMCG00001253
AMCG00001254 mRNA downstream 66988 21343867 ~ 21353441 (+) True AMCG00001254
AMCG00001260 mRNA downstream 694420 21971299 ~ 21992332 (+) True AMCG00001260
AMCG00001259 mRNA downstream 774991 22051870 ~ 22083241 (+) True AMCG00001259
TU162840 other upstream 192514 21077135 ~ 21078870 (+) True G129877
TU162800 other upstream 328987 20942072 ~ 20942397 (+) True G129843
TU162792 other upstream 346144 20918558 ~ 20925240 (+) True AMCG00001241
TU162705 other upstream 594527 20611272 ~ 20676857 (+) True AMCG00001236
TU162623 other upstream 1781784 19486138 ~ 19489600 (+) True AMCG00001223
TU163362 other downstream 1889384 23166263 ~ 23166656 (+) True G130335
TU163702 other downstream 3156914 24433793 ~ 24454385 (+) True G130616
TU163730 other downstream 3307300 24584179 ~ 24591475 (+) False AMCG00001315
TU164194 other downstream 5579720 26856599 ~ 26863132 (+) False AMCG00001361
TU164234 other downstream 5675029 26951908 ~ 26954597 (+) True AMCG00001365

Expression Profile