RNA id: TU162978



Basic Information


Item Value
RNA id TU162978
length 590
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G129998
representative True

Chromosome Information


Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 21710325 ~ 21710914 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ataaaatgtaatagacTAGGGAAAATTATATCACAATCCATATCACTGAGGACACTGTAAACCTGGGATTAAAAGTCATCACACTGTACCTTTCTTGAGGTCAATCTTTAGTTTCTTGCCCATTTTCTTGTTGCCGAGCCCTATCAGAGGGGACAGCTCTCGGCTTTTCAGCGAAGGGCTCTCGCTCTTACTCGGAGGAGTTGGGGAGAGACTGGTGCCATGAGGTAATGCCAGCTGCCAGTTCCCAAGGCTTTGGTTGCCCTGGATCTCGACTGGCTTCGCAGCATTTTCGATTGGTCGTACAACGAGGTCACTTGGCTTCCCAGCGATCTCATTGGCCGGATGCACTTTCAGTGGGGCTGGCACCTTTCCTTCATCTTTCTCAAACAGCTGGCCTATCAGTTTCTTTTCATATCGCTCCCGGTTGTGCGCAGGCACCACCTCCAGCTGGACAGATGGGTACCTCATGGCCTGCCGAAAAATGTCTTGTGACCTATTGGGAGGGGGAATAAACCAAAACTTCAGTATCATTCTTAAAGGTGAATAATCACAATCAGATCATGAAAATTAATTAACCTACTTAGTCATAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU162977 lncRNA upstream 23467 21686583 ~ 21686858 (+) True G129997
TU162973 lncRNA upstream 57184 21652929 ~ 21653141 (+) True G129993
TU162969 lncRNA upstream 102075 21607840 ~ 21608250 (+) True G129989
TU162964 lncRNA upstream 156230 21551430 ~ 21554095 (+) True G129985
TU162961 lncRNA upstream 168653 21541463 ~ 21541672 (+) True G129984
TU162982 lncRNA downstream 110811 21821725 ~ 21822894 (+) True G130002
TU162988 lncRNA downstream 113344 21824258 ~ 21824598 (+) True G130008
TU162991 lncRNA downstream 115331 21826245 ~ 21866625 (+) True G130010
TU162995 lncRNA downstream 199119 21910033 ~ 21950803 (+) True G130014
TU163009 lncRNA downstream 267139 21978053 ~ 21979797 (+) False AMCG00001260
AMCG00001254 mRNA upstream 356884 21343867 ~ 21353441 (+) True AMCG00001254
AMCG00001253 mRNA upstream 370037 21319470 ~ 21340288 (+) True AMCG00001253
AMCG00001252 mRNA upstream 394679 21304273 ~ 21315646 (+) True AMCG00001252
AMCG00001249 mRNA upstream 483483 21224605 ~ 21226842 (+) True AMCG00001249
AMCG00001250 mRNA upstream 506753 21181637 ~ 21203572 (+) True AMCG00001250
AMCG00001260 mRNA downstream 260385 21971299 ~ 21992332 (+) True AMCG00001260
AMCG00001259 mRNA downstream 340956 22051870 ~ 22083241 (+) True AMCG00001259
AMCG00001265 mRNA downstream 449477 22160391 ~ 22169050 (+) True AMCG00001265
AMCG00001269 mRNA downstream 478994 22189908 ~ 22238654 (+) True AMCG00001269
AMCG00001271 mRNA downstream 591616 22302530 ~ 22321173 (+) True AMCG00001271
TU162879 other upstream 433446 21271384 ~ 21276879 (+) True G129913
TU162840 other upstream 631455 21077135 ~ 21078870 (+) True G129877
TU162800 other upstream 767928 20942072 ~ 20942397 (+) True G129843
TU162792 other upstream 785085 20918558 ~ 20925240 (+) True AMCG00001241
TU162705 other upstream 1033468 20611272 ~ 20676857 (+) True AMCG00001236
TU163362 other downstream 1455349 23166263 ~ 23166656 (+) True G130335
TU163702 other downstream 2722879 24433793 ~ 24454385 (+) True G130616
TU163730 other downstream 2873265 24584179 ~ 24591475 (+) False AMCG00001315
TU164194 other downstream 5145685 26856599 ~ 26863132 (+) False AMCG00001361
TU164234 other downstream 5240994 26951908 ~ 26954597 (+) True AMCG00001365

Expression Profile