RNA id: TU163121


Basic Information

Item Value
RNA id TU163121
length 239
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G130125
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 22326640 ~ 22326878 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGCCACTGTCTTCTGTTCCAAGACAAGCTGGGGGAAATAACTGTGAAAGCGTAGCCCCGTGTTGTTTGCGTCTCTGCTAAGATGATCTGTTGACTCACAAACCAAACCATGAACCAAATCAGTGATGTATATCGAATGCACAACAGtcgcaataatattaataatcagaGCTTTGACAATTTCTCTCCATCCCGAACCTTCCTTTTCAGTTCCATTGTGTGTTAACGTTTGAGAGAAA

Function

GO:

id name namespace
GO:0045743 positive regulation of fibroblast growth factor receptor signaling pathway biological_process
GO:0021591 ventricular system development biological_process
GO:0021592 fourth ventricle development biological_process
GO:0040036 regulation of fibroblast growth factor receptor signaling pathway biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163093 lncRNA upstream 96118 22229414 ~ 22230522 (+) False AMCG00001269
TU163085 lncRNA upstream 121515 22202030 ~ 22205125 (+) True G130090
TU163009 lncRNA upstream 346843 21978053 ~ 21979797 (+) False AMCG00001260
TU162995 lncRNA upstream 375837 21910033 ~ 21950803 (+) True G130014
TU162991 lncRNA upstream 460015 21826245 ~ 21866625 (+) True G130010
TU163149 lncRNA downstream 173157 22500035 ~ 22500792 (+) False AMCG00001278
TU163153 lncRNA downstream 255438 22582316 ~ 22582621 (+) True G130152
TU163154 lncRNA downstream 255820 22582698 ~ 22582964 (+) True G130153
TU163145 lncRNA downstream 288406 22615284 ~ 22616157 (+) True G130144
TU163165 lncRNA downstream 298080 22624958 ~ 22625203 (+) True G130160
AMCG00001271 mRNA upstream 5467 22302530 ~ 22321173 (+) True AMCG00001271
AMCG00001269 mRNA upstream 87986 22189908 ~ 22238654 (+) True AMCG00001269
AMCG00001265 mRNA upstream 157590 22160391 ~ 22169050 (+) True AMCG00001265
AMCG00001259 mRNA upstream 243399 22051870 ~ 22083241 (+) True AMCG00001259
AMCG00001260 mRNA upstream 334308 21971299 ~ 21992332 (+) True AMCG00001260
AMCG00001272 mRNA downstream 57842 22384720 ~ 22450890 (+) True AMCG00001272
AMCG00001278 mRNA downstream 173287 22500165 ~ 22530836 (+) True AMCG00001278
AMCG00001277 mRNA downstream 213472 22540350 ~ 22542253 (+) True AMCG00001277
AMCG00001275 mRNA downstream 224262 22551140 ~ 22565620 (+) True AMCG00001275
AMCG00001276 mRNA downstream 257149 22584027 ~ 22607255 (+) True AMCG00001276
TU162879 other upstream 1049761 21271384 ~ 21276879 (+) True G129913
TU162840 other upstream 1247770 21077135 ~ 21078870 (+) True G129877
TU162800 other upstream 1384243 20942072 ~ 20942397 (+) True G129843
TU162792 other upstream 1401400 20918558 ~ 20925240 (+) True AMCG00001241
TU162705 other upstream 1649783 20611272 ~ 20676857 (+) True AMCG00001236
TU163362 other downstream 839385 23166263 ~ 23166656 (+) True G130335
TU163702 other downstream 2106915 24433793 ~ 24454385 (+) True G130616
TU163730 other downstream 2257301 24584179 ~ 24591475 (+) False AMCG00001315
TU164194 other downstream 4529721 26856599 ~ 26863132 (+) False AMCG00001361
TU164234 other downstream 4625030 26951908 ~ 26954597 (+) True AMCG00001365

Expression Profile