RNA id: TU163619


Basic Information

Item Value
RNA id TU163619
length 1034
lncRNA type sense_over
GC content 0.34
exon number 2
gene id G130552
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 24052822 ~ 24120461 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaaaaaaagaaaaaaaaaaagagtgtaGCTCCCTGAGTTTGAGAGTGCCAAACATGCAAGTAACACACCACAGAGTTTGACTACAAAGATTGGAAGATGCTGTTTAGCCATTAAATCAGAAAACTTACAGATAAGTTGCCTACTGGAAGCTAGcctggttaaaaaataaacaaacacaattcaataataataataataataataataataataataataataataacttgtcACCTAGATATAACAagagtttatttatattatacattgtttAACTGCAATCAGATTAAATGCATGGGATCCTCTTCTCCTTTCCAAGAACATCATGAAGGAAGATGAAATTCCTGTAACCTCAATTGAACATCTATCCTTTATAATTTACTGTAACTAAAAAAAATTCCTGGACTTTCAAGTGCTGTGCTTTTTACAGTCAATTTAGTCAGTACTGTGTCTCTCAGCTCAATAACCTGGTGTGCTGCTataaattcaatgtatttaatgtgcttGCTGAGAAGTGTTCGTTGTGTGTCTCTTACTGTAATtgacacaagaaaaaaataaaaaaataattgaagtcATTTAGCTATCTTTTATGCTGTCTTTCATGTTGATATCATGTTAGCAATGCAAAATGTGATTTAGGTTAGCAATGGCaaggtttattgtttttagatGCAAACAACTCAGGCCATTCTGTACAATAACACTGGATCCCTGTGGCATCGTTCTAAAAGAGATTTGTGTTTTAGGTTGTAAATGCTGACAATGTTATGACAGAAGCTGTTTCACAGTTCAGAGAATATGAAGCTGAAATCTCTCTCAGTGAGGGTCAAAGTGCTTAAAaagttctgaaaacaaatgtattggtaTAACACAATAAAGATTGGGTTCCACCCCTTTTAAAAGCAGATGTCAGGAAACGATTGCCCCAGGAGGTCTTCACCAATGTTTGTGATCTCAAGGTATCTGTTTGGATGAGATGCAGAAAATCTACAACCTGCCtgggcatttttttaaatacatttactctTCC

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0055004 atrial cardiac myofibril assembly biological_process
GO:0055014 atrial cardiac muscle cell development biological_process

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163590 lncRNA upstream 126811 23924878 ~ 23926011 (+) True G130530
TU163591 lncRNA upstream 128945 23923211 ~ 23923877 (+) True G130531
TU163544 lncRNA upstream 196706 23855720 ~ 23856116 (+) True G130492
TU163512 lncRNA upstream 323593 23729005 ~ 23729229 (+) True G130461
TU163488 lncRNA upstream 431845 23616380 ~ 23620977 (+) False AMCG00001292
TU163703 lncRNA downstream 304104 24424565 ~ 24437017 (+) True AMCG00001312
TU163746 lncRNA downstream 630658 24751119 ~ 24751414 (+) True G130648
TU163787 lncRNA downstream 902218 25022679 ~ 25023049 (+) True G130684
TU163792 lncRNA downstream 936160 25056621 ~ 25056978 (+) True G130689
TU163795 lncRNA downstream 966200 25086661 ~ 25086898 (+) True G130692
AMCG00001298 mRNA upstream 62740 23948449 ~ 23990082 (+) True AMCG00001298
AMCG00001300 mRNA upstream 139013 23903328 ~ 23913809 (+) True AMCG00001300
AMCG00001294 mRNA upstream 293753 23721823 ~ 23759069 (+) True AMCG00001294
AMCG00001292 mRNA upstream 367701 23565151 ~ 23685121 (+) False AMCG00001292
AMCG00001285 mRNA upstream 932867 23100907 ~ 23119955 (+) True AMCG00001285
AMCG00001299 mRNA downstream 59789 24180250 ~ 24207621 (+) True AMCG00001299
AMCG00001309 mRNA downstream 136375 24256836 ~ 24286635 (+) True AMCG00001309
AMCG00001302 mRNA downstream 202210 24322671 ~ 24351647 (+) True AMCG00001302
AMCG00001312 mRNA downstream 316029 24436490 ~ 24446233 (+) False AMCG00001312
AMCG00001313 mRNA downstream 327160 24447621 ~ 24455129 (+) True AMCG00001313
TU163362 other upstream 886166 23166263 ~ 23166656 (+) True G130335
TU162879 other upstream 2775943 21271384 ~ 21276879 (+) True G129913
TU162840 other upstream 2973952 21077135 ~ 21078870 (+) True G129877
TU162800 other upstream 3110425 20942072 ~ 20942397 (+) True G129843
TU162792 other upstream 3127582 20918558 ~ 20925240 (+) True AMCG00001241
TU163702 other downstream 313332 24433793 ~ 24454385 (+) True G130616
TU163730 other downstream 463718 24584179 ~ 24591475 (+) False AMCG00001315
TU164194 other downstream 2736138 26856599 ~ 26863132 (+) False AMCG00001361
TU164234 other downstream 2831447 26951908 ~ 26954597 (+) True AMCG00001365

Expression Profile