RNA id: TU163795


Basic Information

Item Value
RNA id TU163795
length 238
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G130692
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 25086661 ~ 25086898 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttgaGGAATCTCTGCTTGAAGATGCCATCCTCACTCTAATAGCTCACAagtttggtgatttgtatgataCTGGTAATCCTAATGTGACATTGCTAGTTGAGGatattgtgaaaacagtggATGCCCTCCCCAACATGCTcaagagaatgctgtataaaGATCCACGGCCTGGTGTACCTGCTTTTACAGCTGTTCAAAAAGTTCTCCAGAGTTCTTTTGCAAACACCATCCCTATCAT

Function

GO:

id name namespace
GO:0072329 monocarboxylic acid catabolic process biological_process
GO:0017001 antibiotic catabolic process biological_process
GO:0019541 propionate metabolic process biological_process
GO:0019543 propionate catabolic process biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:0019626 short-chain fatty acid catabolic process biological_process
GO:0046459 short-chain fatty acid metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163792 lncRNA upstream 29683 25056621 ~ 25056978 (+) True G130689
TU163787 lncRNA upstream 63612 25022679 ~ 25023049 (+) True G130684
TU163746 lncRNA upstream 335247 24751119 ~ 24751414 (+) True G130648
TU163703 lncRNA upstream 649644 24424565 ~ 24437017 (+) True AMCG00001312
TU163619 lncRNA upstream 966200 24052822 ~ 24120461 (+) True G130552
TU163798 lncRNA downstream 36696 25123594 ~ 25126079 (+) True G130695
TU163808 lncRNA downstream 109484 25196382 ~ 25196991 (+) True G130705
TU163814 lncRNA downstream 128327 25215225 ~ 25215735 (+) True G130711
TU163815 lncRNA downstream 129040 25215938 ~ 25217050 (+) True G130712
TU163820 lncRNA downstream 134718 25221616 ~ 25246154 (+) True G130715
AMCG00001322 mRNA upstream 41849 25029903 ~ 25044812 (+) True AMCG00001322
AMCG00001319 mRNA upstream 224956 24702643 ~ 24861705 (+) True AMCG00001319
AMCG00001317 mRNA upstream 426732 24645852 ~ 24659929 (+) True AMCG00001317
AMCG00001315 mRNA upstream 480189 24587338 ~ 24606472 (+) True AMCG00001315
AMCG00001314 mRNA upstream 510290 24568365 ~ 24576371 (+) True AMCG00001314
AMCG00001324 mRNA downstream 32738 25119636 ~ 25146056 (+) True AMCG00001324
AMCG00001329 mRNA downstream 63399 25150297 ~ 25150756 (+) True AMCG00001329
AMCG00001330 mRNA downstream 63866 25150764 ~ 25164833 (+) True AMCG00001330
AMCG00001325 mRNA downstream 159478 25246376 ~ 25296858 (+) True AMCG00001325
AMCG00001328 mRNA downstream 212198 25299096 ~ 25302688 (+) True AMCG00001328
TU163730 other upstream 495186 24584179 ~ 24591475 (+) False AMCG00001315
TU163702 other upstream 632276 24433793 ~ 24454385 (+) True G130616
TU163362 other upstream 1920005 23166263 ~ 23166656 (+) True G130335
TU162879 other upstream 3809782 21271384 ~ 21276879 (+) True G129913
TU162840 other upstream 4007791 21077135 ~ 21078870 (+) True G129877
TU164194 other downstream 1769701 26856599 ~ 26863132 (+) False AMCG00001361
TU164234 other downstream 1865010 26951908 ~ 26954597 (+) True AMCG00001365

Expression Profile