RNA id: TU163798


Basic Information

Item Value
RNA id TU163798
length 2402
lncRNA type intronic
GC content 0.43
exon number 2
gene id G130695
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 25123594 ~ 25126079 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tcaaTGGTCTGCAAATTAATCATGATACAACAACATTTGCAGTATATGCTATTGCACAATGGGCCTTTCAGCAAACCAGTTTCAAACTGTTCATCTCAGCCATGTCACCGTGCATCTGAGCCACCGAGAAACAACAGATCCCAGAATTCTAGGATAATAGGAAAATCCTACCTTATTTCCATACTATGTTGATTGATGAACAATGACACCTGAGCCTTTAACACAGCAATGTATATagatctctctttctcttgtgAGAGAGatctatagagagagagagagagagagagagagagagatacacagacTAGTCTCTCTCTCATGTGGACTCTATAATGTTTCCTCAGTTCATGTAATGAAATTCTTCCCACACCGAGCACAGCTGTAGTCTCTCCCCTGTGtggattttcaaatgtaaattacacTTTGATGAATCAGAGAAACCCTTTTCCACAGTGACTACAGTTacatggtctctctcctgtgtgaatttCACATTTCTTCAGTTCTCCTGATGTACTGAAACCCTTCCCACTCTGATCACAATGGAGGTCTTTCTCCAGAGTGAATTTTCTGGTGTGCCTTGTAAGTATGCAAGTAACCGAAACTCCTCCCACACTGACTACAGCtgtatggtctctctcctgtatgaACTCGATAATGTTTCTTCAGATCTCCTGATGCCATGAAACCTTTCCCACACTGACTACAGCtgtatggtctctctcctgtgtgaaatCGATAATGTGTCTTCAGTTCTCCTGATGCCATGAAATCCTTCCCACACTGATTACAGGtgaatggtctctctcctgtgtgaactCGAAAATGTCGTCTCAGTTCTGCTGATACAATGAAACCCTTCCCACACTGATTACATCTATAGGGTCGCTCTCCTGTGTGAATTTTCTGGTGTAACTTAAGACTACATATACgactgaaactcttcccacactgactACATTTGCACATCCCCTGTCCTGTGTGAACTTGGTAATGTTTCTTTAGATGTCCTGATGTACTGAAACCCTTGCCACACTGATCACAGATGTgaggtttctctcctgtgtgaactCGATAATGTCGCTTCAGGTGTCCTGACAAcatgaaactcttcccacactgatcACAGCTGTAGGgcctctctcctgtgtgaactCTACAATGTTTCCTCAGTTCTCCTAAAGTAATGAAACACTTCCCACACTGATCACAGCTGTAAggtctctctcctgtatgaATTTTCTGGTGTAACTTAAGATGTCCTGATTGAGAGAAATTCTTCCCACACTGAGCACAGCGGTACGGTCTCTCCCCTGTGTGCATTCGCAAGTGTGAATTAAGCTTTGATGAACTACAGAAGCCCTTTCCACAGTGACTACAGTTATATGggctctctcctgtgtgaatttGCATGTGTATTCGAAGGTAGGATGATCTcatgaaactcttcccacactgatcACAGCTGTGAGGTCTATTTACCATGTGACTTTGgtaatgtattttcagttcTTCTGATGTAATGAAAAGCTTCTTGCACTGATCACAGCTGTGATGTTGATTTCCTGTGTGAATGTTCTGGTGTGACTTCAAGCTACCTGATTTGCAGAATTCTGTTTCACATTGTTCACAGCAGTACAGTCTTTCTCCCATGTGGTGGCACTGGTGTATTTTAAGATGTGAGGTTATTCTGAAGCTTGTTCCACACTGTGCACAGTAATTACAGTTCTCATGGTCTCCAGTGAACTCTGCTGTGTCTTTGTTCACTGCCAGTGATCTGTAAGTACTGAAGCTTTTACTTCTTTGTGGCAATAACAGTCTCTCCAATCTCACTGAGCAAGGCCTCATTTCCTCCTGAGGAGGAATCCTTTGTTCTGGCTGTTGTCCTCTGCTTCTATTGTCCTCTCTGTATTGATCCAGCTGGGAGGTATCTAGCTCAGTCTCTGTGTTCTCATGTTTAACAGACTGGAGCTCAGTCTCTGTTTTATAAGTGATACAATCCAAAATGGTATCTTGGAGTAGGTCAATGTGCGGTTCCGAAACATTCAATGTATCAGTTTCACTCAGTTGCACTTCTGTGTACTCCAGTTTAACCACAGAtttaatgtcaatattttcAGTAGTGTTCACTGGATCCGGATGATTGAGCCCCTCTCTTCTGTGCTCAGACTGTGCTGGATTGTGCCTCTGAGGTCCTGCCTCTGCCATATAGACAGGGTGCAAACTACTGAGCTTCTCCTCCATCTGTTCATTCCTGTGATGGTCAACAATCTCCCCTTCGTCTTCAATGGCTGTGGGTTCTAAATCCCGTCTCAGACTAAGATCCTACTCTTCCATGCCATGTTGATTCTCAATGGCATTTGTTTTCTCACTTTCTCAGAGAGCACTGGCCTTTACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163795 lncRNA upstream 36696 25086661 ~ 25086898 (+) True G130692
TU163792 lncRNA upstream 66616 25056621 ~ 25056978 (+) True G130689
TU163787 lncRNA upstream 100545 25022679 ~ 25023049 (+) True G130684
TU163746 lncRNA upstream 372180 24751119 ~ 24751414 (+) True G130648
TU163703 lncRNA upstream 686577 24424565 ~ 24437017 (+) True AMCG00001312
TU163808 lncRNA downstream 70303 25196382 ~ 25196991 (+) True G130705
TU163814 lncRNA downstream 89146 25215225 ~ 25215735 (+) True G130711
TU163815 lncRNA downstream 89859 25215938 ~ 25217050 (+) True G130712
TU163820 lncRNA downstream 95537 25221616 ~ 25246154 (+) True G130715
TU163875 lncRNA downstream 256100 25382179 ~ 25397634 (+) True G130757
AMCG00001322 mRNA upstream 78782 25029903 ~ 25044812 (+) True AMCG00001322
AMCG00001319 mRNA upstream 261889 24702643 ~ 24861705 (+) True AMCG00001319
AMCG00001317 mRNA upstream 463665 24645852 ~ 24659929 (+) True AMCG00001317
AMCG00001315 mRNA upstream 517122 24587338 ~ 24606472 (+) True AMCG00001315
AMCG00001314 mRNA upstream 547223 24568365 ~ 24576371 (+) True AMCG00001314
AMCG00001329 mRNA downstream 24218 25150297 ~ 25150756 (+) True AMCG00001329
AMCG00001330 mRNA downstream 24685 25150764 ~ 25164833 (+) True AMCG00001330
AMCG00001325 mRNA downstream 120297 25246376 ~ 25296858 (+) True AMCG00001325
AMCG00001328 mRNA downstream 173017 25299096 ~ 25302688 (+) True AMCG00001328
AMCG00001332 mRNA downstream 237814 25363893 ~ 25365296 (+) True AMCG00001332
TU163730 other upstream 532119 24584179 ~ 24591475 (+) False AMCG00001315
TU163702 other upstream 669209 24433793 ~ 24454385 (+) True G130616
TU163362 other upstream 1956938 23166263 ~ 23166656 (+) True G130335
TU162879 other upstream 3846715 21271384 ~ 21276879 (+) True G129913
TU162840 other upstream 4044724 21077135 ~ 21078870 (+) True G129877
TU164194 other downstream 1730520 26856599 ~ 26863132 (+) False AMCG00001361
TU164234 other downstream 1825829 26951908 ~ 26954597 (+) True AMCG00001365

Expression Profile