RNA id: TU163875



Basic Information


Item Value
RNA id TU163875
length 215
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G130757
representative True

Chromosome Information


Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 25382179 ~ 25397634 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ACAGATGGCTCACTGAAAACAGTCCAAGTGAACCATAAATCCATCCTGAAGAAGCGGTTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNAGGGAAGCATGTCCTCCTCAATAATATTTACACTGAGCTCTACATCACAGAGGGGGACTGTGGAGAGGTCAATAATGAACACGAGGTGAGGCAGATTGAGATGGCAGCCAAGaagaaacacacaca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU163820 lncRNA upstream 136025 25221616 ~ 25246154 (+) True G130715
TU163815 lncRNA upstream 165129 25215938 ~ 25217050 (+) True G130712
TU163814 lncRNA upstream 166444 25215225 ~ 25215735 (+) True G130711
TU163808 lncRNA upstream 185188 25196382 ~ 25196991 (+) True G130705
TU163798 lncRNA upstream 256100 25123594 ~ 25126079 (+) True G130695
TU163895 lncRNA downstream 52183 25449817 ~ 25450306 (+) False AMCG00001331
TU163896 lncRNA downstream 52882 25450516 ~ 25450858 (+) True G130773
TU163913 lncRNA downstream 184708 25582342 ~ 25582606 (+) True G130789
TU163916 lncRNA downstream 235600 25633234 ~ 25633576 (+) True G130792
TU163941 lncRNA downstream 277583 25675217 ~ 25675482 (+) True G130817
AMCG00001332 mRNA upstream 16883 25363893 ~ 25365296 (+) True AMCG00001332
AMCG00001328 mRNA upstream 79491 25299096 ~ 25302688 (+) True AMCG00001328
AMCG00001325 mRNA upstream 85321 25246376 ~ 25296858 (+) True AMCG00001325
AMCG00001330 mRNA upstream 217346 25150764 ~ 25164833 (+) True AMCG00001330
AMCG00001329 mRNA upstream 231423 25150297 ~ 25150756 (+) True AMCG00001329
AMCG00001331 mRNA downstream 26053 25423687 ~ 25450310 (+) True AMCG00001331
AMCG00001334 mRNA downstream 154810 25552444 ~ 25581376 (+) True AMCG00001334
AMCG00001335 mRNA downstream 232413 25630047 ~ 25636339 (+) True AMCG00001335
AMCG00001333 mRNA downstream 266231 25663865 ~ 25673767 (+) True AMCG00001333
AMCG00001338 mRNA downstream 321270 25718904 ~ 25725679 (+) True AMCG00001338
TU163730 other upstream 790704 24584179 ~ 24591475 (+) False AMCG00001315
TU163702 other upstream 927794 24433793 ~ 24454385 (+) True G130616
TU163362 other upstream 2215523 23166263 ~ 23166656 (+) True G130335
TU162879 other upstream 4105300 21271384 ~ 21276879 (+) True G129913
TU162840 other upstream 4303309 21077135 ~ 21078870 (+) True G129877
TU164194 other downstream 1458965 26856599 ~ 26863132 (+) False AMCG00001361
TU164234 other downstream 1554274 26951908 ~ 26954597 (+) True AMCG00001365

Expression Profile