RNA id: TU163896


Basic Information

Item Value
RNA id TU163896
length 343
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G130773
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 25450516 ~ 25450858 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGACATTGCAGGAATTCAGTTGagatttacattacatattaacatattttaactttaatattaTAACACCAACAGAATAACTTTCAGATGTAATTATGCCTAAAATGGTATGCTAATTTAGCTCTGGCATTCTTCGCTGAGGTTCACTTTCTCATTAAGACACAAGTAGTGCATGAACAGGCTATTTGTAATTGCTGTGCGCCTCTGGCTTGGTTAGACGTGAACGGGGAATTGGGAATGCAGTCTGTATGCTATAGACTGAATGGTAGAGCATTTAGGTTGAAGACCTTTTCCTGTGAGCTTCACCTGTTCACAAAAGCATAAAATTAAACCACGTCCTGA

Function

GO:

id name namespace
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163895 lncRNA upstream 210 25449817 ~ 25450306 (+) False AMCG00001331
TU163875 lncRNA upstream 52882 25382179 ~ 25397634 (+) True G130757
TU163820 lncRNA upstream 204362 25221616 ~ 25246154 (+) True G130715
TU163815 lncRNA upstream 233466 25215938 ~ 25217050 (+) True G130712
TU163814 lncRNA upstream 234781 25215225 ~ 25215735 (+) True G130711
TU163913 lncRNA downstream 131484 25582342 ~ 25582606 (+) True G130789
TU163916 lncRNA downstream 182376 25633234 ~ 25633576 (+) True G130792
TU163941 lncRNA downstream 224359 25675217 ~ 25675482 (+) True G130817
TU163968 lncRNA downstream 276995 25727853 ~ 25729837 (+) True G130839
TU163974 lncRNA downstream 284697 25735555 ~ 25749501 (+) False AMCG00001337
AMCG00001331 mRNA upstream 206 25423687 ~ 25450310 (+) True AMCG00001331
AMCG00001332 mRNA upstream 85220 25363893 ~ 25365296 (+) True AMCG00001332
AMCG00001328 mRNA upstream 147828 25299096 ~ 25302688 (+) True AMCG00001328
AMCG00001325 mRNA upstream 153658 25246376 ~ 25296858 (+) True AMCG00001325
AMCG00001330 mRNA upstream 285683 25150764 ~ 25164833 (+) True AMCG00001330
AMCG00001334 mRNA downstream 101586 25552444 ~ 25581376 (+) True AMCG00001334
AMCG00001335 mRNA downstream 179189 25630047 ~ 25636339 (+) True AMCG00001335
AMCG00001333 mRNA downstream 213007 25663865 ~ 25673767 (+) True AMCG00001333
AMCG00001338 mRNA downstream 268046 25718904 ~ 25725679 (+) True AMCG00001338
AMCG00001337 mRNA downstream 288266 25739124 ~ 25749380 (+) True AMCG00001337
TU163730 other upstream 859041 24584179 ~ 24591475 (+) False AMCG00001315
TU163702 other upstream 996131 24433793 ~ 24454385 (+) True G130616
TU163362 other upstream 2283860 23166263 ~ 23166656 (+) True G130335
TU162879 other upstream 4173637 21271384 ~ 21276879 (+) True G129913
TU162840 other upstream 4371646 21077135 ~ 21078870 (+) True G129877
TU164194 other downstream 1405741 26856599 ~ 26863132 (+) False AMCG00001361
TU164234 other downstream 1501050 26951908 ~ 26954597 (+) True AMCG00001365

Expression Profile