RNA id: TU164097


Basic Information

Item Value
RNA id TU164097
length 3613
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G130948
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 26296707 ~ 26335290 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGAAGGCTCAACAGTGATTGAAAGGAAAGATGACTGCAGGCCGCTTTCTTTGTAGCTGCAGCTTGTGATTTCCAGACTCGCTTCGCCGTCTCATACTATTTCTGCACCGATATGCTTGGGAAAATCGGTAAAGTATGTCTGACCTAAATGTATGTACTTTGCATTAACTAAAAGGCTAGAGATGTTAATTCCACCAGTCAGAAATCAATTCCCTCTGTTTTATATAACCGTACCCCTTTGAAGAAAGAGTCAAGAATGGACAGTTCATGCTGTTGGAGCTATTAAGCACTCAAGAGGTTTCATTCATGAAGACTTTTCAACCTCTAAATAATtagaagaatacaaaaagaatggtctaaaaaaaagagagaaggttCATGTGTTTTTTACCCCATCAACAAAACGGACGTGTTAAATATTTAAGATAGGAGTGAGTAGCATTACActtattgcatttttcttcttcattgtttaatgtaatatgtGCTTCCATGATTAAGGTTTAGCAGTACACAATGTttgcacacactgtacaacagatccccccctcccaccccctctcGTCCTGTCACCTCATCCGCTGCGACGGTGACGGCCGCTGTCCATAGCGCTCAGGGTTTTCTGCACAGCGCCTAATGTGAGCACCAGGAAGCATAAACGAACGTGACAGGCATCCTGAAATGTAGGTCGTGAGGCCCGATGTGTGCTTTTAAGATCGATTTCCACGTGGCAAGCTGCAGGAAGATTAATATTATCTAAAAACTATAGAGCTCTgtaagattgttttgtttttctttaaaaggagACAAATGATTGCATTGATactcaaaaaattaaaaaacaggcaTTGCAAAGAAAGAACACTTCTAGAAGACCACGTACAATTTCAACAGTTATATTGTGATGTTTTAGCGTAAATGCAAGAGAcatgattttattcatttataattcttttttttttttttttctgtcttcccccatttcattatatattgGAGACATTCCTGACATTACAGAGCTCATTTGGCCAGCTTCGCTCGGACTCGACAGTTCAACGCAGGGATATTTCAATGCATCAGAGATATTGAACAATCAGGAGCTgcgcaaaataaatattgacctGTCCtcctccaaaaaataaaaaatgaaatatgatcTATTGGTCACTATCTAGTCTAGAGGGTATTTTTTTATACTCAAATCTTATATTTGAATGCCTTAGTAGTGTAAGTAACTGATAGGCCTATATATCCAGTTTTGAGCATGATCCTCCTTGGCAAATGacttttacacaaaatataccaAATCTAAAGAGTATTTAGCCGACAATGTCAACAGATGCACCAGATCACCTACAAATCTAGACTTTATATACAAAACCAAGAGTACTTCAACGAAATTGAATTCATGTCCCAATAGGTCAGGAAATGCTATTAATACACTTATTCCATTCAACCCGAGTAAAACTAAACAACTGCGGCTGTTTGGTCAGTTTAAATCCGAAAAGGATAGTTCCTTGGTCAATGAAAGGACGTTTCTCCTCCCCTCTTCTCTTAATCCTTTCTATTCAAATATTCAGAATATAAAGAGAAGTTTGAGCAGAAGCACAAGGCAATCAaatcttactctctctctcggtctctgcTTAACCATACATGTTACCTTtcaaagcacaaaaacaaaccagcacCTCAACAACCCAAAATCAAGGTCTTTCCAATTGGGTACAACGCATCAGACAAGATAATTCTATTGCTGTGCCCGATTTGTTCCCAGATTCTAGACTGAAATCTAGAGCAGATCGTATTATTCTTAGCatgacttgtattttattttttatttttgagagGACATTGTAGCACCCTTCAGTGTAGACAAGGCATATCGTGTGGTCCGTTTACCCTGAGCCTCGCTGGCATCACAACAGATTAAAGGATTAGACCCGGTGCAGTTGCATGCAGAGGTGTTGGCAGTATAGGTGCTTTAAGACACATAACCCCCTGCCCTTCATTTTCCCCCATAACAGTGAACCGATCCCCCAGTGTAGGTGGCAATCCACTGAGGGACAGCAAGGCCAAAGTGAGCAATTAAAGACAAGAATAGCTATGTACAGACAAACGGCAAAGTGACATTCGGAAGCAGTGACAGCAGTTCTATCCAATCACAGATCCAGTTTGCAGAGGTGGGAGTTAGTGTggttgttgatttgttttttggctCCAAACAGtccttttttgattttttttccgtACAGAAACAATTTGGTCGGGTCGTTGCTCGTTCCAGTTGTACAGCGGTCACATCATTAAAGGTTCTCAACCATTTTGCATCACAGTAAACGTGTCACACACATGTGCACttatttgcaaaagaaaaatcagacGGATGGTCGGGGGGGGTGGGATTCGTACTGAAACAGACGTCCGCAGCAAGCAAACCGCTCTCATTTGATAACAAAAACCAACTCTCGTCTGCATAGCAAGCAGAGGGACAGAAAAATGCACTTCATTCCAGATCATAAAACCAGTCTTGTAGCACTTGATCTCCCTGCTGATTcttaaatacaaacatcttCCAGAAGACCATATTTtttgtacatacattttgtgaTCAATATGGGCAAAACCTTCCCCTCCccgtttttaaaactaaattctaacaaaaaaatactttaaaatttccgtattaaataattaaaaaaagaaaaaaacgtttAAAACTATTGCCCCACTCCTTCCACCCTTTCCCGAAGCTTCTCTTGTTTACATTGTGTCCATAAAGTAGTCCATGCAGTACCATTATATATAGAGACAAAAAGTCATACttgttgtaattttttttttgtattttttttttgtgttattttcatttttttttttgtttttttttttttttaaagagataaCAGAGAGATTACGTGCTGAATTTAcaatgccaaaaaaaacattcccacaCAAATATTGCAGTCCAAAAACTGTCCTTTTGCATCTCAGATGCTCTAATGTCAGATTACATCAGAGCAGTATGCACTTTATGTCCCAAGCAGGTTCCCTTCTCCTGTGGCACTGTGGGTAACTGCGGAAAGCAGAAACGGGTGATGTTCGCCAGTACAAATCTGCTGTTCGAAAACTGGACGTGAACGGTACTCACCCATTTGCAGCTCAGAAATGGTCTCCACCAGCGACCAGTCTGGGCTGTATCCGCAGTGGGACTTATCCAGGAGGCTGTCCAGGACCTGTCGGACCGTTTGCCTCTCATCCACCATCATGGTTTTGGAGCTCTCGTCAGACATGTGCACCCGAATTACCAGCTGCAGTGGAaatggggaggggagggggggagaaagCAGTGGATTAAGCTTtccacagattaaaaataagaacacaGCCAACTGACATAGGAAAAACAGGGgctgaaatagaaaaaatggattataataaaatatatggtGACGTTACATCAACTGTTTAAATAACATGCCTGtcatttttctgttctgtttttcttttaatatgtgGTATAAATGCCAAAGCTGCTACTTTCACAATATCAGTTTGTCTTTGTGGAGGGCAGGTGTCTGATGCTGAGCAAGAAACACCTTTACTGTCACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU164023 lncRNA upstream 234014 26061148 ~ 26062693 (+) True G130884
TU163974 lncRNA upstream 547206 25735555 ~ 25749501 (+) False AMCG00001337
TU163968 lncRNA upstream 566870 25727853 ~ 25729837 (+) True G130839
TU163941 lncRNA upstream 621225 25675217 ~ 25675482 (+) True G130817
TU163916 lncRNA upstream 663131 25633234 ~ 25633576 (+) True G130792
TU164185 lncRNA downstream 435590 26770880 ~ 26771161 (+) True G131017
TU164189 lncRNA downstream 457981 26793271 ~ 26793553 (+) True G131021
TU164243 lncRNA downstream 643485 26978775 ~ 26980289 (+) True G131072
AMCG00001353 mRNA upstream 5859 26284460 ~ 26290848 (+) True AMCG00001353
AMCG00001347 mRNA upstream 27710 26231286 ~ 26268997 (+) True AMCG00001347
AMCG00001352 mRNA upstream 106837 26187889 ~ 26189870 (+) True AMCG00001352
AMCG00001351 mRNA upstream 155881 26122843 ~ 26140826 (+) True AMCG00001351
AMCG00001349 mRNA upstream 179229 26100278 ~ 26117478 (+) True AMCG00001349
AMCG00001355 mRNA downstream 109791 26445081 ~ 26453330 (+) True AMCG00001355
AMCG00001356 mRNA downstream 146101 26481391 ~ 26488991 (+) True AMCG00001356
AMCG00001357 mRNA downstream 176267 26511557 ~ 26519285 (+) True AMCG00001357
AMCG00001360 mRNA downstream 202662 26537952 ~ 26545509 (+) True AMCG00001360
AMCG00001363 mRNA downstream 501197 26836487 ~ 26838265 (+) True AMCG00001363
TU163730 other upstream 1705232 24584179 ~ 24591475 (+) False AMCG00001315
TU163702 other upstream 1842322 24433793 ~ 24454385 (+) True G130616
TU163362 other upstream 3130051 23166263 ~ 23166656 (+) True G130335
TU162879 other upstream 5019828 21271384 ~ 21276879 (+) True G129913
TU162840 other upstream 5217837 21077135 ~ 21078870 (+) True G129877
TU164194 other downstream 521309 26856599 ~ 26863132 (+) False AMCG00001361
TU164234 other downstream 616618 26951908 ~ 26954597 (+) True AMCG00001365

Expression Profile