RNA id: AMCG00002301



Basic Information


Item Value
RNA id AMCG00002301
length 4225
RNA type mRNA
GC content 0.51
exon number 4
gene id AMCG00002301
representative True

Chromosome Information


Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 10837804 ~ 10847201 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGATGATTTCGACTACAGTGTCCACATATCCGAGCAGGACTGGGATTCCTTCTTCCTGGAGTGTGAGGAGTGCGATCTCTCCCAGCCTGAGCTGGCAGGGTTAGACGACTCCTGCCTGAGTGATGTTGATGAACCAGTGCTGGAGCCTCCATCCAGCGGCTGGGGGGCACAAGCCCAACTTCAGCCGTTCTCACTAGAGACTGAACTGCCCCACTTCTCCATTTTCAGCCCTGTAGACTTCTCAGGGTCTCCCCTTGAGCTAGCCCATCCCTACCTCAGCAGTAGGTATGACACTGGTGCTCTGGAAGATGTCCTGTCGGGCAGTGAGGAGGAGGTGGACCTAGAATCAGTCAACAGGTTTATGGAGAAGCTGAAGACCTTAGCTGGTGGGGAGCAGCCTTCAGTACACAGCAAGGCCTGCCTGGGGACCCAGGTCGGCTTGACAGATGCGTCTTGTCCTGAAACAGCCAGAGAGACATGGCTGCAAGGGGGCGCCTGTGTCTCACCAGGCAAGATTTCCactggcacagagagagaggctttgCTAACAATGTGGTCTGGGTCAGTGTTTCTGCAGGATAATAGCACAGACCGCAAAGAACCTGCCCAAACTGATGTGTCACGGAAACACACAGGAAGGGCAACAGTTCAGTGTGGGGATGTGCATGGATTATTCAGTGAGTTAGGCATCTGCAAACAAGTGACTGCAAGTAGTAAGCATGGGGATGAACGAAATGAACAGTCAGGGGAAGATTCTGGATTCTCTGACACCCCCAGGGAGTATACAGTACAGGAAGAGAAATGGACTACTGGACTGACGAGGAGTGAGTTTCTGGTGACAGTCCAGGAGGTGCAAGACACACCAGAGAGCCTTTTAAAGGATGGACCTGCAGGAAAAGCTTTTGGATCCTTAAGCACATGCAGTAAGGTAGTGTGTGGAACCATCGATGGAGAGATGCAAGAACAGCAGTATTGTGTGAGGCAGACTGTCATTGAGAGTGCAGAGGAAACTATAATTTCTGCAAGAGAAATGGCAGAGATTGCAGGAGATCAGCCTACGGAGGGGAAGGGGGCTATGCTCTGTGTCCTTGACCAGGACTCACCAAGGGGCTCTGAAGAGCTGCCAGGACAAGAAATCAGTGGGAAATCACCAAGCAAGAGACAGGGAACTGGGTCTTTAAGCATGGACTATTGTCAGGCAGGCACCAAAGAGGATTTTTCAAATTCCTTAAAAGAACATCCAAACCCAACTGGAATACCTGCTGTCAGTGGGGATGGGGAGTGTTCCTCAGCAACTGGAATGGTGCAAGAGCTGGCCAGCCAGCCAGCAGCCTCTGTATCAGCAGGAACAGCGGACCAAGGGGGGTGGGAGGCTCCTAATGTACTAAAACAAGAAATAGCTAAAGAGAGGGTCAACTTACACCAGCAGACTTCTCCCAGGGATTTTGCTTTGGCAGGCAGAGAGTCTGCTTCAGAGTGTTGCAGCTCCGCAGTCCTGCCTGTACCTGCATGGTCACCCCTTACTGACTACAGCAGCGGTTGCAAAGATCAGCGCCATCCAACAGAGGCAGAGCAGTCACTCAGAGAGAGCCTTGCAACACTCCAGCATGAAGATGTCTCTAGCCTTTGGCAAATGGAGAATGGGCACGGTGGATCGGCACATGCAGAAGATGGCAAAACTGAACGACATTTGGCATACCTGTGCATCGACAATGCGGATGAGGCGTGTGTGAGCACTGAGACAAGGGAATCAGAGTCTCTTCACCCCACCGCACTGAACGTGCAGCCAGACAGCCCACTTGATACTGTGACCATTGTGCGTGTTGGGTCGGGAGTAGTGGCTGTAGCAGATCCGCTGGGTCAGCTGAAATCACTTTATAACACAGTCTCAGGATGCACCGTCAGTGCGATAGATGAGCCACATAACACAGCCCCTGTCCTTCCCTCAAGTTCTGAAGTAGCTGAAGAAAGCTCTGCCCATTTGGCCACGAGTGACAGCTCATACGCGATGTCCGGCCACTCTGCTGCAAGGCTCCCCACACCTGAACAGGAGAGCAGGACAGAGTGTCACACAGACCAAAGCCTGCTCTTAATAAGCGAGGAAACAGCGCCGGCTGAGAGTTGTGATCTCTTCGGTGCTGCAGTGCTCCGCGACTCTGCATGGCCTCAAAACACTCCGGCTGTAGCTGACAATAACACCCAGAAGGACTCTTTGCTGCAGCTAGAATTCAGAACAGAGGGATTACCTCCCGGAGACAGTTTGCCGACAGGAGATCCTCACCAGGATCAGGCACAGCAGATTGTCCTGGAGCGCTGTGTGCCAGATGAGCTTGAACACAGTCACGATGCCATGGCTTGCGCTTTAGTAACAAACAGtgaaagcaaaagcaaagcCTTGGATTGCATGCAGCCGCTTAACGCCCCCCAAGTTCACGTGATCTCAGATTTCTGGGAAGAAATGGAGAAGTTGACGATCAACGACATTTTATACATCAAGCTGATGGACAGTGGCCAGCAGCCCCAGGGCCCCTTCCTTCACGACGCCACCATGACAGACGTCTCGGACACCTCTGACTCTGGCTACTTCACACACCTGGAGGACTCACCTGACAAGCCTGACCTGTCCAGTGGAAATGATATCTCCATGTTTTCGGATTTCGAGGAGTTCTCCCAAACACAGGACTCCAGCACCGACCCCACCCTAGAGCCCCAGGACACTCCTGTGCAGACCAGCATGCAAGAGCTTTCATACCATAAAGGGGAGGTGTGGGAGGGTGAATCTGGGGAGATCCCCTCCATCTCCAGGTCTGAAGCTCCTTGTTTCCCAGGCAGCACCAGAACGAAGGGCATCAAGAAGATATACAAGAACCCCTATTTCTCACCTGCAGCCGCAACGGAGAGCTACATGATTTCTGTACCTGAGATTTTCGAGTACTTGTTCGATGTGCAGGGAGCGACGGGTTCCGGCGTGTCTTTTGCCAACGAAGACGTGAGCAAGAAGTCCATTCCCGAGATGTATGACTATTTCTTTTCCGAATTTGAGACAGAGAGTTTTTTCTTCCCTATCATCCAGGGATCAGAAAGTGACCAGAACGAGCCTATTCCaatcttctcctcttcctcctgctccgaTAAAGTTCTCCCGGTGCCGGAGGTGTATGATAGTTTTTTTGAAGGTGTTCCTGAAGCTGGAGTGGAGGACCAGGAAGACAGCGGGCCAATCCGCGTGGTGACACGTGTCGATCATTGCACCAGTACCCCCTCTGCCGTCTCTGGCCCTGACGCTTATGAGCACTTCTTCACTGACAGGGACCTGGACCAGAGCTTTTTCTGGAGAAACCTCATGTCTCTGAGAGGGAGACGCTTCCTGAGACGGACGGAAGGCACTGGGGATGGCCACCAATCCTCGTCTTCAGCAGCGGAGGACGGGAAGAAGGGATCTGTCTGCAGGAAAAAGGGTCCAGCCAAAGGCTGGGAGAAACGAGATGATGACTGCCCACCGATGGCACTCAGCTTCCTGAAAGAGCAGATTCTGAGACACCTGGAGGAGCAAGGGAAGAGAGGCACAGATTCTAGGACAGCGCTTGCCATGCCAAGAAAAGAGAGTTTTCTGCTGTCGGTGAACCAGTCTGATATGTGTTTAGTCTGCATTGCTTTTGCATCCTGGGTGCTGAAGTCATCTAATCCACAAGCTGCAGATGCCTGGAAAGCAGCTTTATTGGCAAACGTCAGCGCTATCTCAGCCATACGATACCTGAGAAGGTATGTCAAGAAGGGCAAGCCAGCAGATGTGCCGTGAAATGAACCTCTGCAAACCATCCCACCGGCAAGAACAGCTACCAGGATGTGCCAGCTGGCTCTCTGGGACTAGGCCTTAGTTTTAACCCAGAAGAAAAAATGATGCATACTGTGTTtggaaggaaatatttaaatcgATGTAAATAATATTAGATGAGAGTGAAATCCCATTGTTCCGGTGTTGTaatttaaagtatctgtgaTAATAGAAGCCATGGATAACACAGTGTTGCTGGATGTTTGTAGACTTCTAGTTCCTGTACATAAAATATGATCTTGCCATCACagagtaaaacaacaacaacatgaaaaaacagAGGTAAATAAATCTGGAATACCATGTGTATAACAGCAGTGTATACATGAACTGAGCTTTGAATATCCCAACAAATCTAATGTATAAAaattgtaaaacacacacacaa

Function


GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0061061 muscle structure development biological_process
GO:0070546 L-phenylalanine aminotransferase activity molecular_function
GO:0080130 L-phenylalanine molecular_function
GO:0008793 aromatic-amino-acid molecular_function

KEGG:

id description
ko00020 Citrate cycle (TCA cycle)

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU153380 lncRNA downstream 25039 10812186 ~ 10813876 (-) True G122319
TU153358 lncRNA downstream 88134 10750411 ~ 10750781 (-) True G122302
TU153264 lncRNA downstream 558931 10279752 ~ 10279984 (-) False AMCG00002288
TU153259 lncRNA downstream 613933 10223213 ~ 10224982 (-) True G122226
TU153141 lncRNA downstream 987539 9848235 ~ 9851376 (-) True G122131
TU153446 lncRNA upstream 421580 11267564 ~ 11274527 (-) True G122376
TU153515 lncRNA upstream 561540 11407524 ~ 11409586 (-) True G122432
TU153524 lncRNA upstream 603582 11449566 ~ 11449791 (-) True G122438
TU153646 lncRNA upstream 755988 11601972 ~ 11628435 (-) True G122530
TU153665 lncRNA upstream 868425 11714409 ~ 11716145 (-) True G122548
AMCG00002302 mRNA downstream 48960 10755832 ~ 10789955 (-) True AMCG00002302
AMCG00002292 mRNA downstream 435035 10391726 ~ 10403880 (-) True AMCG00002292
AMCG00002288 mRNA downstream 558944 10269889 ~ 10279971 (-) True AMCG00002288
AMCG00002284 mRNA downstream 594130 10240092 ~ 10244785 (-) True AMCG00002284
AMCG00002281 mRNA downstream 599382 10225288 ~ 10239533 (-) True AMCG00002281
AMCG00002303 mRNA upstream 80884 10926868 ~ 10929003 (-) True AMCG00002303
AMCG00002313 mRNA upstream 432442 11278426 ~ 11279133 (-) True AMCG00002313
AMCG00002312 mRNA upstream 447110 11293094 ~ 11304845 (-) True AMCG00002312
AMCG00002315 mRNA upstream 613079 11459063 ~ 11467699 (-) True AMCG00002315
AMCG00002319 mRNA upstream 638775 11484759 ~ 11505246 (-) True AMCG00002319
TU153139 other downstream 985840 9842095 ~ 9853075 (-) False AMCG00002279
TU153137 other downstream 1005691 9831911 ~ 9833224 (-) True AMCG00002276
TU152605 other downstream 2999504 7836495 ~ 7839411 (-) True AMCG00002223
TU151612 other downstream 6619038 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 7052371 3784236 ~ 3786544 (-) True G120927
TU153575 other upstream 678909 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 821771 11667755 ~ 11685089 (-) False AMCG00002327
TU153720 other upstream 885633 11731617 ~ 11734324 (-) True G122597
TU153763 other upstream 1002486 11848470 ~ 11854891 (-) True AMCG00002350
TU153773 other upstream 1025878 11871862 ~ 11872862 (-) False AMCG00002351

Expression Profile


AMCG00002301 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
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AMCG00002301 Expression in each Bioproject

Bar chart with 7 bars.
AMCG00002301 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
End of interactive chart.