RNA id: TU153575


Basic Information

Item Value
RNA id TU153575
length 688
RNA type TUCP
GC content 0.56
exon number 3
gene id AMCG00002317
representative False

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11514000 ~ 11527918 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCAGTGTTATTGCATCCGTGCTTTAAATGATTGTTTCAGCAATTTATTCAGTTTCGTATTGAGCGGTCTTTCCCACACATCCTAGCAGGGGGTTTATTTGTGTGGCTTTCTtctgtaaatactgtattagggtttttattattgtagGTATTGTATCGCATGCTTTCTGTGCTGCTCGGCCGGAGACCGGGGGCGCAGATGAAAGAGTCCCAAGACGGCGTGACCTCGCAAAGAGTCAACACCAGAGACAGATAGAGAAGAGAGCCGGATAAACGGAAAGGAAAAGCGGCGTGGactgcctccctctcccccctcgTCTCTGACTGCGTCTGCCTCGCCGTCGGGACAGTGGACAGTCTGCGGCAGCCCCATCGATCTCACCGTAGGCGGGCCAGGAGACCTCCAGACATGGATCAACTGAAAGTCAAAGACCGCATCCTGGAGAACATCTCTCTCTCGGTCAAAAAGctCCAGAGTTACTTCGCCGCCTGCGAGGATGAGACGCCCGCCATCCGCAACCATGACCGGGTCCTGCAGCGCCTCTGTGAGCACCTGGACCACGCCCTGCTATATGGGCTGCAGGACATCTCCTCGGGGTACTGGGTGCTGGTGCTGCACTTTACGCGGCGCGAGGCAGTCAGACAGATCGAGGAGCTGCAGCACATCGCCACCAACCTGGGCCGCAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153524 lncRNA downstream 75102 11449566 ~ 11449791 (-) True G122438
TU153515 lncRNA downstream 115307 11407524 ~ 11409586 (-) True G122432
TU153446 lncRNA downstream 250366 11267564 ~ 11274527 (-) True G122376
TU153396 lncRNA downstream 677692 10837804 ~ 10847201 (-) False AMCG00002301
TU153380 lncRNA downstream 711017 10812186 ~ 10813876 (-) True G122319
TU153646 lncRNA upstream 74617 11601972 ~ 11628435 (-) True G122530
TU153665 lncRNA upstream 187054 11714409 ~ 11716145 (-) True G122548
TU153668 lncRNA upstream 191175 11718530 ~ 11718969 (-) True G122551
TU153761 lncRNA upstream 317037 11844392 ~ 11845671 (-) True G122632
TU153762 lncRNA upstream 319726 11847081 ~ 11848192 (-) True G122633
AMCG00002318 mRNA downstream 14902 11505875 ~ 11509991 (-) True AMCG00002318
AMCG00002319 mRNA downstream 19647 11484759 ~ 11505246 (-) True AMCG00002319
AMCG00002315 mRNA downstream 57194 11459063 ~ 11467699 (-) True AMCG00002315
AMCG00002312 mRNA downstream 220048 11293094 ~ 11304845 (-) True AMCG00002312
AMCG00002313 mRNA downstream 245760 11278426 ~ 11279133 (-) True AMCG00002313
AMCG00002322 mRNA upstream 3923 11531278 ~ 11532015 (-) True AMCG00002322
AMCG00002321 mRNA upstream 6195 11533550 ~ 11541279 (-) True AMCG00002321
AMCG00002320 mRNA upstream 15336 11542691 ~ 11546457 (-) True AMCG00002320
AMCG00002328 mRNA upstream 85041 11612396 ~ 11620659 (-) True AMCG00002328
AMCG00002326 mRNA upstream 101794 11629149 ~ 11630909 (-) True AMCG00002326
TU153139 other downstream 1671818 9842095 ~ 9853075 (-) False AMCG00002279
TU153137 other downstream 1691669 9831911 ~ 9833224 (-) True AMCG00002276
TU152605 other downstream 3685482 7836495 ~ 7839411 (-) True AMCG00002223
TU151612 other downstream 7305016 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 7738349 3784236 ~ 3786544 (-) True G120927
TU153660 other upstream 140400 11667755 ~ 11685089 (-) False AMCG00002327
TU153720 other upstream 204262 11731617 ~ 11734324 (-) True G122597
TU153763 other upstream 321115 11848470 ~ 11854891 (-) True AMCG00002350
TU153773 other upstream 344507 11871862 ~ 11872862 (-) False AMCG00002351
TU153859 other upstream 468473 11995828 ~ 12006351 (-) True AMCG00002368

Expression Profile