RNA id: AMCG00002522


Basic Information

Item Value
RNA id AMCG00002522
length 535
RNA type mRNA
GC content 0.47
exon number 5
gene id AMCG00002522
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 17544840 ~ 17553514 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCAGTGGGTCTGCAGTTCACCAGGACCATTCAGATTAAAAATACCACATGGTGGGACGAGCATCTTTCAGAGGAGAATAGTGAGTTGATGAGGAAACTGATTCCTGAGGAGTACAACAGCCAAACATCAAGCAAACTTCACCCTCTGAAAGATGAGCCTTGGCCTAGACATCCATGGGAGTCGGGGAGTCGCCGAGTGGGTCTGCTTGCTGTGAAGCTGGGTATGATGCCAATCTGGACAaagatgggagagagagaggtggtgaCGATGCTTCAGgTGCAAGACTGCCATGTCATTAAATATACACCCAAAGAAGAATTTGATGGAAAAACAGCCGCTTTGATAGTTGGAACAAAGAACGTGTCCTTGTTCCATAAAACCGAGGCTGCCTTGGACTTGTATCGTAATGCAGGGGTccctccaaaacaaaaaatatcactTTTCAAGGTGTCGGATAATGCTATCATTAAACCAGGCACTCCGCTGTATGCTGCTCACTTCCGCCCAGGACAGTATGTTGATGTCACGGCAAAA

Function

GO: NA

KEGG:

id description
K02906 RP-L3, MRPL3, rplC; large subunit ribosomal protein L3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155101 lncRNA downstream 306296 17234370 ~ 17238544 (-) True G123705
TU155036 lncRNA downstream 469291 17075312 ~ 17075549 (-) True G123646
TU155030 lncRNA downstream 494784 16995129 ~ 17050056 (-) True G123642
TU155025 lncRNA downstream 562194 16980831 ~ 16982646 (-) True G123637
TU154999 lncRNA downstream 584733 16958162 ~ 16960107 (-) False AMCG00002503
TU155202 lncRNA upstream 106553 17660067 ~ 17675110 (-) True G123788
TU155213 lncRNA upstream 136524 17690038 ~ 17696504 (-) False AMCG00002524
TU155242 lncRNA upstream 258004 17811518 ~ 17815466 (-) True G123824
TU155254 lncRNA upstream 379950 17933464 ~ 17994763 (-) True AMCG00002533
TU155273 lncRNA upstream 497583 18051097 ~ 18052332 (-) True G123845
AMCG00002519 mRNA downstream 14606 17519005 ~ 17530234 (-) True AMCG00002519
AMCG00002518 mRNA downstream 120946 17416137 ~ 17423894 (-) True AMCG00002518
AMCG00002515 mRNA downstream 172878 17354650 ~ 17371962 (-) True AMCG00002515
AMCG00002516 mRNA downstream 236284 17307266 ~ 17308556 (-) True AMCG00002516
AMCG00002514 mRNA downstream 358932 17183401 ~ 17185908 (-) True AMCG00002514
AMCG00002521 mRNA upstream 5314 17558828 ~ 17572989 (-) True AMCG00002521
AMCG00002520 mRNA upstream 45135 17598649 ~ 17606949 (-) True AMCG00002520
AMCG00002523 mRNA upstream 124508 17678022 ~ 17685297 (-) True AMCG00002523
AMCG00002524 mRNA upstream 136494 17690008 ~ 17706289 (-) True AMCG00002524
AMCG00002530 mRNA upstream 285065 17838579 ~ 17857068 (-) True AMCG00002530
TU154950 other downstream 705118 16836156 ~ 16839722 (-) True G123585
TU154543 other downstream 2598529 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 3890604 13649228 ~ 13654236 (-) False AMCG00002421
TU154046 other downstream 4515434 13028197 ~ 13029406 (-) False G122862
TU155250 other upstream 368938 17922452 ~ 17989465 (-) True G123829
TU156333 other upstream 5532480 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 5628407 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 6708051 24261565 ~ 24261823 (-) True G124829
TU156479 other upstream 6738273 24291787 ~ 24339566 (-) True G124848

Expression Profile