RNA id: AMCG00002523


Basic Information

Item Value
RNA id AMCG00002523
length 1473
RNA type mRNA
GC content 0.39
exon number 4
gene id AMCG00002523
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 17678022 ~ 17685297 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGAGTAACACCACGCCCTGTTGTCGTGCTTCGTAGAATAACAGTTGCCGCAGTTTGTTAGAGAACTCAGGGCTATTTTTCTGTCCCGTTAGAAACAGTTTGCAGTCCATTTTAGGCCGTTTTCTGGGAAATACAATGTCTCATACAATAATAACCACGTCGACGACCACCAGCAGCTCGGACAGCGGCTTCGTCAGCGCGGGCTACGCCAGGTCTGTGCAGGGGATGCTGAAGATCGCGCAAGTGGTGGTGTTGCTGATTGCTTTCCTGTGCGTTCACATCTCAAAGCCGACAACTCTCACAGAATACAGCTATTTTGAGGTGGTCACTGTTTGGTTTCTTGTAGTCTTCCTAATTTTCTTCATCATGCACATATTCCGGCTCCAGCCCAAAATGCCTTGTATTAACTGGACTCTTACAGAGTTTGTGCATTACGTCATTGGAACTATTTTAATCCTCATCGCCTCTATTGTAGTCATCGTGAAGAGCTATGGGATATCTGGGCTGGTAGCTGGAGCAGTGCAGCTGTATAAAACAATCTCCAAAGATGGCTTCTCAGCCGATGTGCTGGGCATGTTGCTGTTACATGAATGCAGAGACAGAAGTTGAACCATCTTGTGTGCCTTGAACAAAacagtattatatttaaaacgtGGCTTTTTATATTCAAGTTTGAattgcatatatatgtgtgtatatatgttgttgttgatgttgctAAATATTAGCACCAGAGTTcacattgaaatatttaaaaaaagaacatgtcAATATCTGACAGATTGTATTTACATAGGTCAATTTactgtgatttaattttaattaagagaTAGGGAACATATGTTACAAGATTTATATATGCAAAAAGGCCCTAGAATGTATGAAAACAAGCTTGTTATATACAGGTATAACTAGATACCTGATGATAGAAAAGGTTAGGTTTATCATtgcaagaacaaaacaacaaaatcttgTTATAGGCTTAGTTtgagatacatttttaattaattatttatttaaaaagttgttaCTTGACTGATGTTGAAATCCAAAGACACCCCAGCTGCTGActttatttggtattttttctAACATGTTGATATCTGTCTCCTCAATTCCACTGcctcatgaaaataataaaacaccttGAGGTTTCCTGGGTCCTATTCATTTAAGCCTGCTCAAGCAAGATTGCCCTTCTATTTAACACAGGGGCACAACAGACTTTGTTTCCCTGCTTACAGACTCCAAGACTCTTAAGCCCTCTGATACTGAGCTAACTTGTTTGCAAATAACTTTGCATGCATGCAGTATTTtgacaacaatttaaaaaaaatcaaacccagTTGCCTTGAAATGTGCAAAGTCATAGCAAAGTTATTAGAGGCAGAttgtttgatgggaaattgttgCTGCCAAGTGCTAATGGTAAATTACGTCCTAATTTGATGAGAAACAGAGTAAAATGAAGGC

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155202 lncRNA downstream 2912 17660067 ~ 17675110 (-) True G123788
TU155101 lncRNA downstream 439478 17234370 ~ 17238544 (-) True G123705
TU155036 lncRNA downstream 602473 17075312 ~ 17075549 (-) True G123646
TU155030 lncRNA downstream 627966 16995129 ~ 17050056 (-) True G123642
TU155025 lncRNA downstream 695376 16980831 ~ 16982646 (-) True G123637
TU155213 lncRNA upstream 4741 17690038 ~ 17696504 (-) False AMCG00002524
TU155242 lncRNA upstream 126221 17811518 ~ 17815466 (-) True G123824
TU155254 lncRNA upstream 248167 17933464 ~ 17994763 (-) True AMCG00002533
TU155273 lncRNA upstream 365800 18051097 ~ 18052332 (-) True G123845
TU155304 lncRNA upstream 520371 18205668 ~ 18206132 (-) True G123876
AMCG00002520 mRNA downstream 71073 17598649 ~ 17606949 (-) True AMCG00002520
AMCG00002521 mRNA downstream 105033 17558828 ~ 17572989 (-) True AMCG00002521
AMCG00002522 mRNA downstream 124508 17544840 ~ 17553514 (-) True AMCG00002522
AMCG00002519 mRNA downstream 147788 17519005 ~ 17530234 (-) True AMCG00002519
AMCG00002518 mRNA downstream 254128 17416137 ~ 17423894 (-) True AMCG00002518
AMCG00002524 mRNA upstream 4711 17690008 ~ 17706289 (-) True AMCG00002524
AMCG00002530 mRNA upstream 153282 17838579 ~ 17857068 (-) True AMCG00002530
AMCG00002531 mRNA upstream 190708 17876005 ~ 17902810 (-) True AMCG00002531
AMCG00002533 mRNA upstream 306764 17992061 ~ 18041573 (-) False AMCG00002533
AMCG00002532 mRNA upstream 373235 18058532 ~ 18062065 (-) True AMCG00002532
TU154950 other downstream 838300 16836156 ~ 16839722 (-) True G123585
TU154543 other downstream 2731711 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 4023786 13649228 ~ 13654236 (-) False AMCG00002421
TU154046 other downstream 4648616 13028197 ~ 13029406 (-) False G122862
TU155250 other upstream 237155 17922452 ~ 17989465 (-) True G123829
TU156333 other upstream 5400697 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 5496624 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 6576268 24261565 ~ 24261823 (-) True G124829
TU156479 other upstream 6606490 24291787 ~ 24339566 (-) True G124848

Expression Profile