RNA id: TU153720


Basic Information

Item Value
RNA id TU153720
length 542
RNA type TUCP
GC content 0.63
exon number 3
gene id G122597
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11731617 ~ 11734324 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTGTCTGTGTGCGcaggggtggtggtggtggagggcaGCGCCTTCTCTGGCTCGTCTTCAGGACTGGCGCTTCCCAGGATGCGCCTCCGGGCCTCTGCGTACTCCGCTTCGCGCTGCGCCAGCGACTTCACCTGAGGGTGGGGCCGCTGCGAAGGCAGTTGAGAGCCCAATGAGCCGTTACTGGACGGCCGCTTTAGGATGCGGAtctgtggtgggggggcagcgggGAGAGAGTCGTCCTGGATCACGATGCCGGTCTTCAAAGGAGAGCGGCTCGGCTTTTTCTCCTTCTGGCTGATCCTCAGCTTCTCCTCCAGTCGTCTGTCTATCTCCCCGCTGTCCGCTGCTTCTTCCCAACTCTCAGCAACCTCTTCATCTTCCATGTTCCAGCCTCCCCggacacacactctcacacacacatacacacacactagggGGAAGAGCCTCGGCTTCTGCGCAAGCGCAGGCGCACTCGCGACGTCTACCTCATCATCGCTGACAGAAGGAGGGAGGGGCGCGCACGTCTCTGCACGCACTCAGC

Function

GO: NA

KEGG:

id description
ko04142 Lysosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153668 lncRNA downstream 12648 11718530 ~ 11718969 (-) True G122551
TU153665 lncRNA downstream 15472 11714409 ~ 11716145 (-) True G122548
TU153646 lncRNA downstream 103182 11601972 ~ 11628435 (-) True G122530
TU153524 lncRNA downstream 281826 11449566 ~ 11449791 (-) True G122438
TU153515 lncRNA downstream 322031 11407524 ~ 11409586 (-) True G122432
TU153761 lncRNA upstream 110068 11844392 ~ 11845671 (-) True G122632
TU153762 lncRNA upstream 112757 11847081 ~ 11848192 (-) True G122633
TU153766 lncRNA upstream 123067 11857391 ~ 11859325 (-) True G122636
TU153748 lncRNA upstream 128579 11862903 ~ 11864056 (-) True G122621
TU153768 lncRNA upstream 135283 11869607 ~ 11871379 (-) True AMCG00002351
AMCG00002336 mRNA downstream 5666 11720216 ~ 11725951 (-) True AMCG00002336
AMCG00002335 mRNA downstream 20306 11708258 ~ 11711311 (-) True AMCG00002335
AMCG00002334 mRNA downstream 25922 11703336 ~ 11705695 (-) True AMCG00002334
AMCG00002333 mRNA downstream 30940 11694337 ~ 11700677 (-) True AMCG00002333
AMCG00002327 mRNA downstream 51434 11647911 ~ 11680183 (-) True AMCG00002327
AMCG00002338 mRNA upstream 32960 11767284 ~ 11772145 (-) True AMCG00002338
AMCG00002337 mRNA upstream 39272 11773596 ~ 11783638 (-) True AMCG00002337
AMCG00002348 mRNA upstream 53178 11787502 ~ 11790736 (-) True AMCG00002348
AMCG00002346 mRNA upstream 66117 11800441 ~ 11803744 (-) True AMCG00002346
AMCG00002352 mRNA upstream 69730 11804054 ~ 11805639 (-) True AMCG00002352
TU153660 other downstream 46528 11667755 ~ 11685089 (-) False AMCG00002327
TU153575 other downstream 204262 11524893 ~ 11527355 (-) False AMCG00002317
TU153139 other downstream 1878542 9842095 ~ 9853075 (-) False AMCG00002279
TU153137 other downstream 1898393 9831911 ~ 9833224 (-) True AMCG00002276
TU152605 other downstream 3892206 7836495 ~ 7839411 (-) True AMCG00002223
TU153763 other upstream 114146 11848470 ~ 11854891 (-) True AMCG00002350
TU153773 other upstream 137538 11871862 ~ 11872862 (-) False AMCG00002351
TU153859 other upstream 261504 11995828 ~ 12006351 (-) True AMCG00002368
TU154046 other upstream 1293873 13028197 ~ 13029406 (-) False G122862
TU154047 other upstream 1293873 13028197 ~ 13029406 (-) True G122862

Expression Profile