RNA id: TU153974


Basic Information

Item Value
RNA id TU153974
length 1434
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G122801
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 12195920 ~ 12243914 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACCGTTGTCTCAAAGTGTGCTTTATTATGTCTGCATGGTGATGATTCAGATTTACAATGATGTTTATTCAGATTTGCAATAATAGCACAAATGCCGCCCCCGGTTTGGCGGGCGTATGGACTGCAAGTGTCCGCCCCTCACACACCGCAGCCGGCCGTGTATTTGCTGAGATCTTTTCCCTTGCACTTGTTGACCCAGCCCACCCTGAGGACACAAACAGAGCCCTATTAGCACACAGCCGTCCAGTATTCACAAAAACAGCGTTATACTTCAGATGAACTACAGGTAGAAGAGAGGTGCTAAACACATTGCATTTGTTGCAaactatgaaatatataaatgaacgGAAATAAGTGAATAGAATTCACAATGGATGTTACACTTTGATTGATCTGAATTCATCATTAAGCAATGGTTGGCTTTCAtttgaagatttgtttttcattcttggGCACCCAAACCCACAGTCCAGTGTCAGGGCTGACAGACAGAGCATCCCGCCCTCTCCTGAACTCACCAGGCTGACATGCCGTTGGGGTCTCTGACCACGCGCTTGGCACAGGTGATGTCTACTCCGATGTTATCAGTCAGCAGCTCTGGAAGGACAAGACAGAGGTGAGGGTCTGGATTGAAAACAGGACCAAAGACCCGTCAGCACTGTGCTGCTCAAACAGGAACTAGAAACGGGCAAACCGCACATTGCACAGGAGAACAGCCAAGGGAACAGACGAGCTAATGgttcgagagagagagagagagagagagagagggagagaaagagcagACTAGGGGAATGGTGACGCAGCCCTCCTCTCAGGAAAGGAGTTGCACACTTCAGGGAGACAGAAGCAGTAAGAGCTCCACTCACGGCTGCATTCGATCCCACAGGCGTTCTTGGATCGGGGGGTTTTGTGATCCTCACACCAATAGCGGCTGTTGATCTGGAAGATGCCGTAGTCGGTGGATTGGTCCCGGTTGTGATTGATGGCCGCGGTGTTGTAACTGGACTCCGCAAAGGCCGTGCACACCCAGTCCAGCAGCCTTCAGCGTCCTGGCCAGCTCACAGCGCTCATAAGTCTTCCCGTCCACAGAGGACAGGGCCAGGAGGAGCAGAGCAGCCTTCACCAGGAGGGAATGCATGTTGGTGGCGGTGTCGTCTGTCAGCGCTGGGCTCTTATATAGGGCTTCTCTAGCCATCTGTAAGGGGTGTTTCATAACTTCCCCTAACATTTCCCATAAACGCTTCCCATTTCACATGACTGTTAAAACCTCACAGTGAAAGTGACTAGGTCCTCTTTTCTTGTTGTCgttttgatttttcattttgctaATGAAAGAGTGATGACGTTGGAGTGTGATCACTCCATCCTGTTATTGTTTAAACACTTCATAAATAGAGGAAGTGTAGAGACAAATCAAATCATATCTCTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153878 lncRNA downstream 197102 12043315 ~ 12045019 (-) True G122726
TU153768 lncRNA downstream 370742 11869607 ~ 11871379 (-) True AMCG00002351
TU153748 lncRNA downstream 378065 11862903 ~ 11864056 (-) True G122621
TU153766 lncRNA downstream 382796 11857391 ~ 11859325 (-) True G122636
TU153762 lncRNA downstream 393929 11847081 ~ 11848192 (-) True G122633
TU154042 lncRNA upstream 756927 13000841 ~ 13005335 (-) True G122858
TU154056 lncRNA upstream 808112 13052026 ~ 13052390 (-) True G122869
TU154065 lncRNA upstream 823307 13067221 ~ 13067627 (-) True G122877
TU154067 lncRNA upstream 824920 13068834 ~ 13069238 (-) True G122879
TU154087 lncRNA upstream 897954 13141868 ~ 13147672 (-) True G122897
AMCG00002382 mRNA downstream 39095 12185034 ~ 12203026 (-) True AMCG00002382
AMCG00002374 mRNA downstream 70440 12145146 ~ 12171681 (-) True AMCG00002374
AMCG00002376 mRNA downstream 99777 12140005 ~ 12142344 (-) True AMCG00002376
AMCG00002375 mRNA downstream 102365 12124198 ~ 12139756 (-) True AMCG00002375
AMCG00002377 mRNA downstream 141201 12099324 ~ 12100920 (-) True AMCG00002377
AMCG00002384 mRNA upstream 4233 12248147 ~ 12248946 (-) True AMCG00002384
AMCG00002383 mRNA upstream 7378 12251292 ~ 12260406 (-) True AMCG00002383
AMCG00002385 mRNA upstream 239980 12483894 ~ 12504026 (-) True AMCG00002385
AMCG00002389 mRNA upstream 738915 12982829 ~ 12997422 (-) True AMCG00002389
AMCG00002392 mRNA upstream 788715 13032629 ~ 13044363 (-) True AMCG00002392
TU153859 other downstream 235770 11995828 ~ 12006351 (-) True AMCG00002368
TU153773 other downstream 369259 11871862 ~ 11872862 (-) False AMCG00002351
TU153763 other downstream 387230 11848470 ~ 11854891 (-) True AMCG00002350
TU153720 other downstream 507797 11731617 ~ 11734324 (-) True G122597
TU153660 other downstream 557032 11667755 ~ 11685089 (-) False AMCG00002327
TU154046 other upstream 784283 13028197 ~ 13029406 (-) False G122862
TU154047 other upstream 784283 13028197 ~ 13029406 (-) True G122862
TU154299 other upstream 1405314 13649228 ~ 13654236 (-) False AMCG00002421
TU154543 other upstream 2697346 14941260 ~ 14946311 (-) True G123263
TU154950 other upstream 4592242 16836156 ~ 16839722 (-) True G123585

Expression Profile