RNA id: TU154046


Basic Information

Item Value
RNA id TU154046
length 835
RNA type TUCP
GC content 0.65
exon number 3
gene id G122862
representative False

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 13028197 ~ 13029406 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctctctctttccatccTACAGGTGCTGGCAGAGGTGAAATCCTGGGATCTGCCCCCCCTGAGGGAGCGCTACAGCAAGGCCTGCCAGAGCCTGGCTGTGGTGGAGAACAGGCTGGTGGGTCGCCTTTGTGAGGTGCAGGCGGGCAGCCCCTCCCTGAGTGTCTGTGGGCTCAGCCTGCCCCCCGCCGCCCTGCGCCCGCTGCTGCGCTGCCTGAAGCTGCAGGCCGACCTGAAGGAGCTCCGGCTCTCGGGCAACCGTCTCCACGACGGCCTGATGGCGGAGCTGGTTGCCACGTTAACGACCATGCCCAGCCTTCGCCTGCTGGACCTCTCCTCCAACCACATCACGGGGGAGGGCCTGAGGAAGGCTGCCGCGGCCCTGGATGGGAGGAGCCAGGCTGCGTTCCCGTGCCTGGAGGAGTTGGACCTGAGTGTGAACCCGCTGGGAGATGGCGTGTCTCAGGCGCTGTCCATGCTGCTGTCATCCTGCCCCCTGCTGGCCACACTCAGACTGCAGGCCTGCCAGCTCCGCACCCGCTTCTTGCAGCAGCACCGCCTCCTGTTGGCCAGCGCTCTGGCAGGTGAGACCACACCCACTGACCAGGCCACTGGACTGCATCCACACACACTCGCTGAGACCAGGCTGTGCACAGTAGTCTGTATGTTGTACCTGcgatctgtgtgtctgtcccacaatgcactgggCGCCACAGGACTGGAGCTCATTCTGAAGACACTGCCGCTGCATTCCCACATACACCTGTACCTGTGTGCCATACGCAGGAGCCCTGCAGACCCCCACGCCACCAAGCACCTGACGGCACACCTGTCCCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154042 lncRNA downstream 22862 13000841 ~ 13005335 (-) True G122858
TU153975 lncRNA downstream 784283 12195920 ~ 12243914 (-) False G122801
TU153974 lncRNA downstream 784283 12242121 ~ 12243914 (-) True G122801
TU153878 lncRNA downstream 983178 12043315 ~ 12045019 (-) True G122726
TU153768 lncRNA downstream 1156818 11869607 ~ 11871379 (-) True AMCG00002351
TU154056 lncRNA upstream 22620 13052026 ~ 13052390 (-) True G122869
TU154065 lncRNA upstream 37815 13067221 ~ 13067627 (-) True G122877
TU154067 lncRNA upstream 39428 13068834 ~ 13069238 (-) True G122879
TU154087 lncRNA upstream 112462 13141868 ~ 13147672 (-) True G122897
TU154142 lncRNA upstream 255931 13285337 ~ 13286312 (-) True G122942
AMCG00002389 mRNA downstream 30775 12982829 ~ 12997422 (-) True AMCG00002389
AMCG00002385 mRNA downstream 524171 12483894 ~ 12504026 (-) True AMCG00002385
AMCG00002383 mRNA downstream 767791 12251292 ~ 12260406 (-) True AMCG00002383
AMCG00002384 mRNA downstream 779251 12248147 ~ 12248946 (-) True AMCG00002384
AMCG00002382 mRNA downstream 825171 12185034 ~ 12203026 (-) True AMCG00002382
AMCG00002392 mRNA upstream 3223 13032629 ~ 13044363 (-) True AMCG00002392
AMCG00002398 mRNA upstream 64658 13094064 ~ 13102528 (-) True AMCG00002398
AMCG00002395 mRNA upstream 89074 13118480 ~ 13121283 (-) True AMCG00002395
AMCG00002399 mRNA upstream 122183 13151589 ~ 13152326 (-) True AMCG00002399
AMCG00002396 mRNA upstream 122962 13152368 ~ 13179775 (-) True AMCG00002396
TU153859 other downstream 1021846 11995828 ~ 12006351 (-) True AMCG00002368
TU153773 other downstream 1155335 11871862 ~ 11872862 (-) False AMCG00002351
TU153763 other downstream 1173306 11848470 ~ 11854891 (-) True AMCG00002350
TU153720 other downstream 1293873 11731617 ~ 11734324 (-) True G122597
TU153660 other downstream 1343108 11667755 ~ 11685089 (-) False AMCG00002327
TU154299 other upstream 619822 13649228 ~ 13654236 (-) False AMCG00002421
TU154543 other upstream 1911854 14941260 ~ 14946311 (-) True G123263
TU154950 other upstream 3806750 16836156 ~ 16839722 (-) True G123585
TU155250 other upstream 4893046 17922452 ~ 17989465 (-) True G123829
TU156333 other upstream 10056588 23085994 ~ 23153164 (-) True G124719

Expression Profile