RNA id: TU154056


Basic Information

Item Value
RNA id TU154056
length 365
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G122869
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 13052026 ~ 13052390 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTGACACAAACAACTACAACATGACAGACACAGTTCAGAGAGACTGCAGCGCTATGCTGGCTGTGGCATGTGAGGGTCCGGGGGATGGGGGGGACAGAGCGTGTGCTGGGGGAGTTTGACACCATCTCACACCCACAGGCTGCAGTCACTCAGCTCAGCACTTTCAAAAGCAGCACCAGATTCCAGCCATGCAGGCTTCCTCAagttgaatatataaatatacacacgcAGACGTCTGCGTCATCGGTTTACGCTGCAGCCCACGAAAAACTGAGATGAGGAGAACCACCGTCTTCTACCTCTGCCTTCCGCCAGACAGGTTGAAGGGTCAGCTAAGGTGGTGGGCTCTGATGAAACACTTGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154042 lncRNA downstream 46691 13000841 ~ 13005335 (-) True G122858
TU153975 lncRNA downstream 808112 12195920 ~ 12243914 (-) False G122801
TU153974 lncRNA downstream 808112 12242121 ~ 12243914 (-) True G122801
TU153878 lncRNA downstream 1007007 12043315 ~ 12045019 (-) True G122726
TU153768 lncRNA downstream 1180647 11869607 ~ 11871379 (-) True AMCG00002351
TU154065 lncRNA upstream 14831 13067221 ~ 13067627 (-) True G122877
TU154067 lncRNA upstream 16444 13068834 ~ 13069238 (-) True G122879
TU154087 lncRNA upstream 89478 13141868 ~ 13147672 (-) True G122897
TU154142 lncRNA upstream 232947 13285337 ~ 13286312 (-) True G122942
TU154145 lncRNA upstream 236651 13289041 ~ 13289249 (-) True G122945
AMCG00002392 mRNA downstream 7663 13032629 ~ 13044363 (-) True AMCG00002392
AMCG00002389 mRNA downstream 54604 12982829 ~ 12997422 (-) True AMCG00002389
AMCG00002385 mRNA downstream 548000 12483894 ~ 12504026 (-) True AMCG00002385
AMCG00002383 mRNA downstream 791620 12251292 ~ 12260406 (-) True AMCG00002383
AMCG00002384 mRNA downstream 803080 12248147 ~ 12248946 (-) True AMCG00002384
AMCG00002398 mRNA upstream 41674 13094064 ~ 13102528 (-) True AMCG00002398
AMCG00002395 mRNA upstream 66090 13118480 ~ 13121283 (-) True AMCG00002395
AMCG00002399 mRNA upstream 99199 13151589 ~ 13152326 (-) True AMCG00002399
AMCG00002396 mRNA upstream 99978 13152368 ~ 13179775 (-) True AMCG00002396
AMCG00002397 mRNA upstream 130331 13182721 ~ 13186037 (-) True AMCG00002397
TU154046 other downstream 22620 13028197 ~ 13029406 (-) False G122862
TU154047 other downstream 22620 13028197 ~ 13029406 (-) True G122862
TU153859 other downstream 1045675 11995828 ~ 12006351 (-) True AMCG00002368
TU153773 other downstream 1179164 11871862 ~ 11872862 (-) False AMCG00002351
TU153763 other downstream 1197135 11848470 ~ 11854891 (-) True AMCG00002350
TU154299 other upstream 596838 13649228 ~ 13654236 (-) False AMCG00002421
TU154543 other upstream 1888870 14941260 ~ 14946311 (-) True G123263
TU154950 other upstream 3783766 16836156 ~ 16839722 (-) True G123585
TU155250 other upstream 4870062 17922452 ~ 17989465 (-) True G123829
TU156333 other upstream 10033604 23085994 ~ 23153164 (-) True G124719

Expression Profile