RNA id: TU154199


Basic Information

Item Value
RNA id TU154199
length 798
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G122991
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 13411499 ~ 13412296 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCGGGCGCTACGGAGGCACCAGCACTCGCATGCCGGCGGGGACATGTACAGCTGCAGTGAGTGTGGGAAGACATACCGAGACCTGCGCGGGCTCAAGCGGCACCAGAAGCTGCACCCGGGCCGGAAGCCCTATGCCCTGGTGAACAAGATCAAGGGCTACTGATTTGCTGGCTGGGGGTGAGGACAGTATAAATCTAATCAGTGAATCAGTGATCCAAGTAGGGGAGGGCTGTTTCATCTGCACTGTGATAGTCCAATCTGCAGTGGCAGGTGTGGCACTCAGGCAGCACAGCAGGGAGCACTGAGGACATTAGCTAATATCTCACAGCTGCTCCTCACACCAAGCTGCTGCCACTGTCCAGACCATTGTGCCCCCATGGGGAGAGCCACCTCAGGGCCAACACTGTGAGGGTGAGCTGGGACTTAAGGATGGAAAGGTGTTACCCGCCATGCCTGAACTGCCAGGGCCAGATGTGCTGGTCCTGTACTGCAGTCAGAGAGGTgacttattaaatattacagtaaGTGAGCACCACCACTGCTGTCAGGATGTTGAGTGCTACTGGCCTGTGCTTGAGCTGAGCAGCGTTTCCTCCTGTGTGCTGTCTGTTCACGGGTATGTCCATGAGTTGGGTATAAGACAAACagacaagaaacaaatataaaaaacgATGAATTTATCACAGAATATCCCACATTCAAATGATGACAATGCAGTATATCAGTTTGCACACTTTCTTCAATGTGTTCCAGTTAAGAACATGTAAAAATTGTTTCTGCAATAAAGGATTGGGTT

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154158 lncRNA downstream 105904 13303152 ~ 13305595 (-) True G122957
TU154157 lncRNA downstream 108417 13302120 ~ 13303082 (-) True G122956
TU154156 lncRNA downstream 111381 13299523 ~ 13300118 (-) True G122955
TU154155 lncRNA downstream 112825 13297432 ~ 13298674 (-) True G122954
TU154154 lncRNA downstream 114145 13296904 ~ 13297354 (-) True G122953
TU154235 lncRNA upstream 42789 13455085 ~ 13457059 (-) True G123014
TU154255 lncRNA upstream 74818 13487114 ~ 13491617 (-) True G123027
TU154403 lncRNA upstream 665948 14078244 ~ 14111201 (-) True G123152
TU154433 lncRNA upstream 1130525 14542821 ~ 14543020 (-) True G123175
TU154435 lncRNA upstream 1153951 14566247 ~ 14567067 (-) True G123177
AMCG00002415 mRNA downstream 369 13406352 ~ 13411130 (-) True AMCG00002415
AMCG00002411 mRNA downstream 27444 13377167 ~ 13384055 (-) True AMCG00002411
AMCG00002410 mRNA downstream 42102 13332995 ~ 13369397 (-) True AMCG00002410
AMCG00002405 mRNA downstream 161648 13238743 ~ 13249851 (-) True AMCG00002405
AMCG00002404 mRNA downstream 184355 13219608 ~ 13227144 (-) True AMCG00002404
AMCG00002416 mRNA upstream 2004 13414300 ~ 13430384 (-) True AMCG00002416
AMCG00002417 mRNA upstream 46187 13458483 ~ 13478876 (-) True AMCG00002417
AMCG00002419 mRNA upstream 102028 13514324 ~ 13531753 (-) True AMCG00002419
AMCG00002420 mRNA upstream 125186 13537482 ~ 13570758 (-) True AMCG00002420
AMCG00002421 mRNA upstream 236931 13649227 ~ 13654247 (-) True AMCG00002421
TU154046 other downstream 382093 13028197 ~ 13029406 (-) False G122862
TU154047 other downstream 382093 13028197 ~ 13029406 (-) True G122862
TU153859 other downstream 1405148 11995828 ~ 12006351 (-) True AMCG00002368
TU153773 other downstream 1538637 11871862 ~ 11872862 (-) False AMCG00002351
TU153763 other downstream 1556608 11848470 ~ 11854891 (-) True AMCG00002350
TU154299 other upstream 236932 13649228 ~ 13654236 (-) False AMCG00002421
TU154543 other upstream 1528964 14941260 ~ 14946311 (-) True G123263
TU154950 other upstream 3423860 16836156 ~ 16839722 (-) True G123585
TU155250 other upstream 4510156 17922452 ~ 17989465 (-) True G123829
TU156333 other upstream 9673698 23085994 ~ 23153164 (-) True G124719

Expression Profile