RNA id: TU154473


Basic Information

Item Value
RNA id TU154473
length 1030
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G123204
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 14691970 ~ 14692999 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gcaaacgtacaaaatcagcaggggatcaaatacttttttcccctcactgtaacattttttgtttgcattcattCGTTTATGGACAGCTGTCAATTCTGATAAACATTTTTGCAACTATATTCTCTCAGCTGCATGACCAGCACCCATAATGCAGGCTTTTAGAAATAATGTGTTTAGCTGACGCAATACTATAAACACTAGAAGAAAGCCATAGTCCAACGATTGTGATTGTGGGTGTTTATTTGGATTTAATCTTCATGACAGACAGGGATAAACACTCACCAAACCACAAAAACTAACACATGAAAAACCACCTAATAACAGTAAAAGCTCATTCAAGTTCCTTCATGGCTTCATTCTGTGATTTGTCTTCTTGGTCCAAGTCCATTCCTCTGCCCTTATACAGAGATACATCACTGTGTTTccatcagtttttatttcatcCTTTTTATTTGAGCTTTATTCTGGGTCAACAGCAGTTTCAGAGGAATCGGGTTCAAGTGTAGTTTCCGTATCAGAAGCACAGGTTAGATACACTCAAATACTACATTCTCTATCTAATTTCTCCTTCAAGCTGAaccaatgcaatacaatacaatcagcCTCGACCATTTGCACCATCAGGAAATGAGATGCCAATGATAACAATTCTACGTAGCTGTCTCTCCTCAATGAGTCCCCATGTTTCAGAAGTATATCATCTTCTCTTCAGTGCCACAGAAAtccacaatcaaataaaaataggcACAGATGacaattgaaataaacaaaaacactctgCTTTTCAAGGCAGTACATACACATTGGAGAACACATTACTTTCAGTGACAGTGAAGTCATGATATTTGAACCACGCTTGGCACAAGGCTCTCATTGAGTCCTGACCCTGAGAACACAAAATAATCCCACGCAGAAGGAGAGCTGTGCAGACTACAAGATACGCAGATCACTTTGGTAAGTTATGCATTACATACAGAgtagtacagtgagggaaaaaagtatttgatcccctgctgattttgtacgtttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154437 lncRNA downstream 97428 14588809 ~ 14594542 (-) True G123179
TU154436 lncRNA downstream 103212 14587214 ~ 14588758 (-) True G123178
TU154435 lncRNA downstream 124903 14566247 ~ 14567067 (-) True G123177
TU154433 lncRNA downstream 148950 14542821 ~ 14543020 (-) True G123175
TU154403 lncRNA downstream 580769 14078244 ~ 14111201 (-) True G123152
TU154664 lncRNA upstream 788145 15481144 ~ 15483716 (-) True G123346
TU154710 lncRNA upstream 994456 15687455 ~ 15689341 (-) True G123385
TU154729 lncRNA upstream 1029934 15722933 ~ 15723137 (-) True G123401
TU154733 lncRNA upstream 1097606 15790605 ~ 15795172 (-) True G123405
TU154794 lncRNA upstream 1431283 16124282 ~ 16127405 (-) True G123452
AMCG00002445 mRNA downstream 9541 14680384 ~ 14682429 (-) True AMCG00002445
AMCG00002438 mRNA downstream 322150 14365055 ~ 14369820 (-) True AMCG00002438
AMCG00002435 mRNA downstream 540125 14127804 ~ 14151845 (-) True AMCG00002435
AMCG00002436 mRNA downstream 590571 14070785 ~ 14101399 (-) True AMCG00002436
AMCG00002434 mRNA downstream 648066 13990906 ~ 14043904 (-) True AMCG00002434
AMCG00002448 mRNA upstream 3399 14696398 ~ 14731127 (-) True AMCG00002448
AMCG00002447 mRNA upstream 68838 14761837 ~ 14787948 (-) True AMCG00002447
AMCG00002446 mRNA upstream 102088 14795087 ~ 14849774 (-) True AMCG00002446
AMCG00002452 mRNA upstream 218456 14911455 ~ 14920505 (-) True AMCG00002452
AMCG00002453 mRNA upstream 283107 14976106 ~ 15005344 (-) True AMCG00002453
TU154299 other downstream 1037734 13649228 ~ 13654236 (-) False AMCG00002421
TU154046 other downstream 1662564 13028197 ~ 13029406 (-) False G122862
TU154047 other downstream 1662564 13028197 ~ 13029406 (-) True G122862
TU153859 other downstream 2685619 11995828 ~ 12006351 (-) True AMCG00002368
TU153773 other downstream 2819108 11871862 ~ 11872862 (-) False AMCG00002351
TU154543 other upstream 248261 14941260 ~ 14946311 (-) True G123263
TU154950 other upstream 2143157 16836156 ~ 16839722 (-) True G123585
TU155250 other upstream 3229453 17922452 ~ 17989465 (-) True G123829
TU156333 other upstream 8392995 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 8488922 23181921 ~ 23185168 (-) True AMCG00002629

Expression Profile